Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KIP84_RS01610 Genome accession   NZ_CP075323
Coordinates   341840..343966 (+) Length   708 a.a.
NCBI ID   WP_068563954.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336840..348966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS01590 (KIP84_01590) pilM 338791..339849 (+) 1059 WP_199113500.1 pilus assembly protein PilM Machinery gene
  KIP84_RS01595 (KIP84_01595) pilN 339849..340490 (+) 642 WP_199113502.1 PilN domain-containing protein Machinery gene
  KIP84_RS01600 (KIP84_01600) pilO 340487..341239 (+) 753 WP_213689205.1 type 4a pilus biogenesis protein PilO Machinery gene
  KIP84_RS01605 (KIP84_01605) pilP 341250..341777 (+) 528 WP_068563956.1 pilus assembly protein PilP Machinery gene
  KIP84_RS01610 (KIP84_01610) pilQ 341840..343966 (+) 2127 WP_068563954.1 type IV pilus secretin PilQ Machinery gene
  KIP84_RS01615 (KIP84_01615) aroK 343978..344547 (+) 570 WP_002116987.1 shikimate kinase AroK -
  KIP84_RS01620 (KIP84_01620) aroB 344576..345658 (+) 1083 WP_005067096.1 3-dehydroquinate synthase -
  KIP84_RS01625 (KIP84_01625) - 345675..346544 (+) 870 WP_060464990.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76604.03 Da        Isoelectric Point: 6.5432

>NTDB_id=568760 KIP84_RS01610 WP_068563954.1 341840..343966(+) (pilQ) [Acinetobacter sp. BHS4]
MNHVFRQFSMGAIAIAITQVASAQVSMTNIVPTQIAGQGTEIRVIFNGLPPQPQAYQLENPSRLVLDFNKAQLNLTQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQAVVKPVAISAAQPQGVSNIGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVRTLGSKIPTHLAKRLNVNDFATPVSTIESYNDKGNGIITIQSTGSYEYMAYQAENKLTI
SLKRPQDKSVNTSSKPSNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDEAKALAQTIKLAPIQTDYIHLSYAKAIDLLKLIEDSRDGKGAVANRTANSDSLALES
LLSSRGSAVADTRTNTLIINDTAQNIDKIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVG
GSETTLWNLREPKKDDTTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQSAKVATGQQVPYLMTTTSGAGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVNNGETVILGGVFEQTTSNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=568760 KIP84_RS01610 WP_068563954.1 341840..343966(+) (pilQ) [Acinetobacter sp. BHS4]
ATGAATCACGTATTCCGTCAGTTTTCGATGGGGGCTATAGCGATTGCAATTACGCAAGTTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCGACGCAAATAGCGGGCCAAGGTACAGAAATTCGAGTGATATTTAATGGCTTGCCGCCACAACCGC
AAGCATATCAACTTGAAAATCCTTCACGTTTGGTTTTAGATTTTAATAAAGCGCAGCTGAATTTAACCCAATCAAAAGTA
GCGATTGGAACGAATGAAGCGAGTTCGGTCGATGTAAGCTCTGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
GGCAGGTGCTTTTACAACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGCGCAAGCTGTAGTTAAACCTG
TAGCAATAAGTGCGGCACAACCCCAAGGCGTTTCAAATATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGTCTTATCGTT
ATTGACCTATTGGGAAGTAACACTCCTGTTGATGTGCAGCAACAAGGTAGCAAAGTTGTAGTAAGAACTTTAGGTTCTAA
AATTCCTACTCATTTAGCTAAACGCTTAAATGTAAATGATTTTGCAACGCCTGTTTCGACCATTGAATCATATAATGATA
AAGGCAATGGTATTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCGGAAAATAAATTAACAATT
AGTCTAAAACGTCCTCAAGATAAAAGTGTAAACACTTCATCTAAACCATCTAATTATTCTGGTAATAAGCTTTCTCTTGA
TTTTCAGGATATTGAAGTTCGTAGGGTTCTACAGTTACTTGCAGATTTCACTGGTATTAATATGGTGGCTGCCGATAGTG
TTCAGGGTAATATTACGTTGCGGTTAAAAGATGTTCCGTGGGATCAGGCACTTGATATTATTTTAAAAACTAAAAATTTG
GATAAACGTAGAAATGGAAATGTAATTTGGATTGCTCCAGTTGCTGAACTGATCAAGGCTGAAGATGATGAAGCAAAAGC
TTTAGCGCAAACGATTAAGTTAGCGCCGATCCAAACCGATTACATTCATTTGAGTTATGCCAAAGCCATCGATTTACTTA
AGTTAATTGAGGATTCTCGTGACGGGAAGGGGGCGGTTGCGAATCGTACTGCAAACTCGGATTCTCTTGCGTTGGAGAGC
TTGCTAAGTTCACGCGGTAGTGCTGTGGCTGATACACGGACTAATACTTTAATTATTAATGACACAGCACAAAACATTGA
TAAAATCCGTAAAATGATTGATTTACTTGATGTACAAGTGAAGCAGGTTATGGTTGAGGCGCGTATTGTAAGAGCCTCTA
CTTCTTTTACCAAAGAGCTTGGCGTCAAATGGGGAATATTATCGCAAGGGATTACCAACAATAATAATTTATTAGTTGGT
GGTAGCGAAACAACCTTATGGAATTTACGAGAGCCCAAAAAAGATGATACTACCGGTGGTTATAAATATACGATTGAACG
TCCAGATAATTTAAATGTCGATTTAGGGGTTTCTAATCCAGCTGGAAGTATTGCCTTTGGCTTGATTAGTATGTCTGATT
TTATGCTTGATCTCGAACTTTCTGCATTGCAAGCCGATGGCTATGGTGAAGTTATTTCCACACCTAAAGTCATGACCGCA
GATAAGCAATCTGCAAAAGTCGCTACTGGTCAGCAAGTTCCTTATCTGATGACGACTACTTCTGGTGCGGGTTCCACAGC
AACTACTTCATTTAAAGATGCGCTCCTAAGCTTGGATGTTACTCCGAGCATTACACCTGATGGTAAAATTCAAATGAAAT
TGGATATTTCAAAGGATTCTGTAGCTGGTGAAGCACCTAATGGTGAATTAATTTTAAATAAGAATAATATTAATACCAAT
GTACTTGTTAATAATGGTGAGACAGTCATTTTAGGAGGGGTGTTTGAGCAGACGACTTCTAATTCACAAACCAAGGTTCC
TTTCTTTGGAGACATTCCTGTGGTTGGGCGTTTGTTTAGAAAAGATGTGAAATCTGATGATAAGCAAGAGTTACTGATTT
TCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-118)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(542-700)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

85.298

100

0.869
  pilQ Acinetobacter baumannii strain A118

85.16

100

0.867
  comQ Acinetobacter baylyi ADP1

73.045

100

0.739
  pilQ Pseudomonas aeruginosa PAK

39.291

99.576

0.391