Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   KIP84_RS01590 Genome accession   NZ_CP075323
Coordinates   338791..339849 (+) Length   352 a.a.
NCBI ID   WP_199113500.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333791..344849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS01575 (KIP84_01575) - 334854..335186 (+) 333 WP_002116981.1 hypothetical protein -
  KIP84_RS01580 (KIP84_01580) - 335189..336013 (+) 825 WP_213689203.1 putative RNA methyltransferase -
  KIP84_RS01585 (KIP84_01585) ponA 336068..338629 (-) 2562 WP_213689204.1 penicillin-binding protein PBP1a -
  KIP84_RS01590 (KIP84_01590) pilM 338791..339849 (+) 1059 WP_199113500.1 pilus assembly protein PilM Machinery gene
  KIP84_RS01595 (KIP84_01595) pilN 339849..340490 (+) 642 WP_199113502.1 PilN domain-containing protein Machinery gene
  KIP84_RS01600 (KIP84_01600) pilO 340487..341239 (+) 753 WP_213689205.1 type 4a pilus biogenesis protein PilO Machinery gene
  KIP84_RS01605 (KIP84_01605) pilP 341250..341777 (+) 528 WP_068563956.1 pilus assembly protein PilP Machinery gene
  KIP84_RS01610 (KIP84_01610) pilQ 341840..343966 (+) 2127 WP_068563954.1 type IV pilus secretin PilQ Machinery gene
  KIP84_RS01615 (KIP84_01615) aroK 343978..344547 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39098.73 Da        Isoelectric Point: 4.4657

>NTDB_id=568756 KIP84_RS01590 WP_199113500.1 338791..339849(+) (pilM) [Acinetobacter sp. BHS4]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALTPLPENSVVEKNILNPEAVAEALERAMNLANPHTTNAAI
AVPTSTVIHKTIEMDADMNDDEREVQIRLDAEQYIPFPLDEVSLDFEVLPDRLPNPNRVNVLLVATRTENVETRVEVLEL
VDLMPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
AGRAKKERSLPDDYDIEILEPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=568756 KIP84_RS01590 WP_199113500.1 338791..339849(+) (pilM) [Acinetobacter sp. BHS4]
GTGCTCAGGTTATATCGTAAACCAAATAAGGGGTTAATGGGCGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTTAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTAACGCCTTTACCTGAGAACAGTGTAGTTGAAAAAAATA
TCTTGAATCCAGAAGCAGTTGCAGAAGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCATACCACTAACGCTGCAATT
GCTGTTCCAACATCGACGGTTATTCATAAAACCATCGAAATGGATGCAGATATGAACGATGATGAACGTGAAGTTCAGAT
TCGATTAGATGCGGAGCAATATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTTTGAGGTTTTACCAGATCGACTGC
CAAATCCAAATCGTGTGAATGTACTTTTAGTCGCAACACGAACAGAAAATGTTGAAACACGCGTAGAAGTACTGGAACTG
GTTGATTTAATGCCTAAGCTAGCCGATGTTGAAAGTTATGCTGTTGAGCGTGCTTTTAGTGTGTTTGCTGATAGCTTGCC
CATGGGTGCAAATACCATTGGTATTTTAGATATTGGCCATACCATGACCACATTGTCGGTTATGCAAAATGGCAAAATCA
TTTATACCCGTGAACAAGTCTTTGGCGGTAAACAGCTTACTTTGGAAATTCAAAGCCGTTATGGTTTGTCATTAGAAGAA
GCGGGACGCGCTAAAAAAGAACGTTCTTTGCCAGATGATTATGACATCGAAATCTTGGAACCATTTTTAGATGCTGTGGT
TCAGCAAGCTGCTAGATCTCTACAATTTTTCTTCTCTTCATCCCAATTCAATGAAATTGACCATATTTTGCTAGCGGGTG
GCAATGCCAACATTCCAGGGCTTGCTAAATTGTTGCAGCAGAAACTCGGTTACCGAGTCACTATTGCCAATCCATTTTTA
CAAATGGGTTTCTCTCCTCAAGTCGACGTTCAAAAAATTGAAAATGATGCTTCTTCATTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

96.307

100

0.963
  comM Acinetobacter nosocomialis M2

96.307

100

0.963
  comM Acinetobacter baylyi ADP1

80.966

100

0.81
  pilM Legionella pneumophila strain ERS1305867

41.808

100

0.42