Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KIP84_RS01605 Genome accession   NZ_CP075323
Coordinates   341250..341777 (+) Length   175 a.a.
NCBI ID   WP_068563956.1    Uniprot ID   A0AAW8QDV9
Organism   Acinetobacter sp. BHS4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336250..346777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS01590 (KIP84_01590) pilM 338791..339849 (+) 1059 WP_199113500.1 pilus assembly protein PilM Machinery gene
  KIP84_RS01595 (KIP84_01595) pilN 339849..340490 (+) 642 WP_199113502.1 PilN domain-containing protein Machinery gene
  KIP84_RS01600 (KIP84_01600) pilO 340487..341239 (+) 753 WP_213689205.1 type 4a pilus biogenesis protein PilO Machinery gene
  KIP84_RS01605 (KIP84_01605) pilP 341250..341777 (+) 528 WP_068563956.1 pilus assembly protein PilP Machinery gene
  KIP84_RS01610 (KIP84_01610) pilQ 341840..343966 (+) 2127 WP_068563954.1 type IV pilus secretin PilQ Machinery gene
  KIP84_RS01615 (KIP84_01615) aroK 343978..344547 (+) 570 WP_002116987.1 shikimate kinase AroK -
  KIP84_RS01620 (KIP84_01620) aroB 344576..345658 (+) 1083 WP_005067096.1 3-dehydroquinate synthase -
  KIP84_RS01625 (KIP84_01625) - 345675..346544 (+) 870 WP_060464990.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19274.33 Da        Isoelectric Point: 9.0286

>NTDB_id=568759 KIP84_RS01605 WP_068563956.1 341250..341777(+) (pilP) [Acinetobacter sp. BHS4]
MKLKQFSLSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDHQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=568759 KIP84_RS01605 WP_068563956.1 341250..341777(+) (pilP) [Acinetobacter sp. BHS4]
ATGAAACTTAAACAATTTTCTCTTTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTGAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCATCAAATTGAGCGAGTACAGGTAGGGAATTATATTG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATCTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCTGCGCCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88

100

0.88
  comL Acinetobacter baylyi ADP1

75.152

94.286

0.709