Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   KIP84_RS01600 Genome accession   NZ_CP075323
Coordinates   340487..341239 (+) Length   250 a.a.
NCBI ID   WP_213689205.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335487..346239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS01585 (KIP84_01585) ponA 336068..338629 (-) 2562 WP_213689204.1 penicillin-binding protein PBP1a -
  KIP84_RS01590 (KIP84_01590) pilM 338791..339849 (+) 1059 WP_199113500.1 pilus assembly protein PilM Machinery gene
  KIP84_RS01595 (KIP84_01595) pilN 339849..340490 (+) 642 WP_199113502.1 PilN domain-containing protein Machinery gene
  KIP84_RS01600 (KIP84_01600) pilO 340487..341239 (+) 753 WP_213689205.1 type 4a pilus biogenesis protein PilO Machinery gene
  KIP84_RS01605 (KIP84_01605) pilP 341250..341777 (+) 528 WP_068563956.1 pilus assembly protein PilP Machinery gene
  KIP84_RS01610 (KIP84_01610) pilQ 341840..343966 (+) 2127 WP_068563954.1 type IV pilus secretin PilQ Machinery gene
  KIP84_RS01615 (KIP84_01615) aroK 343978..344547 (+) 570 WP_002116987.1 shikimate kinase AroK -
  KIP84_RS01620 (KIP84_01620) aroB 344576..345658 (+) 1083 WP_005067096.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28257.10 Da        Isoelectric Point: 4.8782

>NTDB_id=568758 KIP84_RS01600 WP_213689205.1 340487..341239(+) (pilO) [Acinetobacter sp. BHS4]
MSPDELHELSLEQAPSKKKKISLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFIVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAVENPEHQEKNTSASSVAP
DSSTANTQPK

Nucleotide


Download         Length: 753 bp        

>NTDB_id=568758 KIP84_RS01600 WP_213689205.1 340487..341239(+) (pilO) [Acinetobacter sp. BHS4]
ATGAGTCCTGATGAACTTCATGAGCTATCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCTCCTTAGAAAAATTTCT
TCAGCAATTTAACACGCTCGATATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTATTGGCTTTGGGGTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAACTTCAATCAACAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCAGCATTACCACGTATTGTGAC
GATGCATGATTTTATTGTTGAAGCTGCTCCTGTTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGCTATATGGGTGCTGTAGAAAATCCTGAACATCAGGAAAAAAATACTTCGGCTTCCTCGGTAGCACCT
GATTCTTCTACTGCTAACACACAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

83.6

100

0.836
  comO Acinetobacter baylyi ADP1

70.124

96.4

0.676