Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IOMTU133_RS30120 Genome accession   NZ_AP017302
Coordinates   6563615..6565108 (+) Length   497 a.a.
NCBI ID   WP_009878288.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain IOMTU 133     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6558615..6570108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOMTU133_RS30090 (IOMTU133_6201) - 6558736..6559650 (-) 915 WP_023111998.1 fimbrial protein -
  IOMTU133_RS30095 (IOMTU133_6203) sutA 6560087..6560404 (-) 318 WP_003096440.1 transcriptional regulator SutA -
  IOMTU133_RS30100 (IOMTU133_6204) - 6560482..6560907 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  IOMTU133_RS30105 (IOMTU133_6205) - 6561168..6562496 (-) 1329 WP_023111999.1 ammonium transporter -
  IOMTU133_RS30110 (IOMTU133_6206) glnK 6562536..6562874 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  IOMTU133_RS30115 (IOMTU133_6207) - 6563314..6563574 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  IOMTU133_RS30120 (IOMTU133_6208) comM 6563615..6565108 (+) 1494 WP_009878288.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IOMTU133_RS30125 (IOMTU133_6209) betT 6565233..6567218 (+) 1986 WP_023112000.1 choline BCCT transporter BetT -
  IOMTU133_RS30130 (IOMTU133_6210) pchP 6567261..6568310 (-) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  IOMTU133_RS30135 (IOMTU133_6211) - 6568461..6569378 (-) 918 WP_023112001.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53066.98 Da        Isoelectric Point: 7.9587

>NTDB_id=56853 IOMTU133_RS30120 WP_009878288.1 6563615..6565108(+) (comM) [Pseudomonas aeruginosa strain IOMTU 133]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEISERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRATTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=56853 IOMTU133_RS30120 WP_009878288.1 6563615..6565108(+) (comM) [Pseudomonas aeruginosa strain IOMTU 133]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCTAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGATCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.452

99.799

0.563
  comM Haemophilus influenzae Rd KW20

55.01

100

0.563
  comM Vibrio cholerae O1 biovar El Tor strain E7946

56.048

99.799

0.559
  comM Vibrio cholerae strain A1552

56.048

99.799

0.559
  comM Glaesserella parasuis strain SC1401

55.09

100

0.555
  comM Acinetobacter baylyi ADP1

53.414

100

0.535
  comM Legionella pneumophila str. Paris

50.301

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.301

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.154

100

0.471
  comM Helicobacter pylori 26695

38.845

100

0.392

Multiple sequence alignment