Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   KIP81_RS07255 Genome accession   NZ_CP075172
Coordinates   1459188..1459898 (-) Length   236 a.a.
NCBI ID   WP_021142846.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1454188..1464898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS07240 (KIP81_07235) rnc 1456140..1456826 (-) 687 WP_021142842.1 ribonuclease III -
  KIP81_RS07245 (KIP81_07240) vicX 1457033..1457842 (-) 810 WP_243602702.1 MBL fold metallo-hydrolase Regulator
  KIP81_RS07250 (KIP81_07245) vicK 1457843..1459195 (-) 1353 WP_024343735.1 cell wall metabolism sensor histidine kinase VicK Regulator
  KIP81_RS07255 (KIP81_07250) vicR 1459188..1459898 (-) 711 WP_021142846.1 response regulator YycF Regulator
  KIP81_RS07260 (KIP81_07255) - 1460206..1460970 (+) 765 WP_024343734.1 amino acid ABC transporter ATP-binding protein -
  KIP81_RS07265 (KIP81_07260) - 1460981..1461784 (+) 804 WP_243602703.1 transporter substrate-binding domain-containing protein -
  KIP81_RS07270 (KIP81_07265) - 1461800..1462504 (+) 705 WP_004232799.1 amino acid ABC transporter permease -
  KIP81_RS07275 (KIP81_07270) - 1462514..1463161 (+) 648 WP_004232801.1 amino acid ABC transporter permease -
  KIP81_RS07280 (KIP81_07275) - 1463193..1463801 (-) 609 WP_243602704.1 VTT domain-containing protein -
  KIP81_RS07285 (KIP81_07280) - 1464019..1464315 (-) 297 WP_243602705.1 hypothetical protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27179.94 Da        Isoelectric Point: 4.6553

>NTDB_id=568260 KIP81_RS07255 WP_021142846.1 1459188..1459898(-) (vicR) [Streptococcus equinus strain SheepZ001]
MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAIEKFEEENPDLIILDLMLPELDGLEVAKEVRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIE
LTHREFELLHHLATHMGQVMTREYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKSYE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=568260 KIP81_RS07255 WP_021142846.1 1459188..1459898(-) (vicR) [Streptococcus equinus strain SheepZ001]
ATGAAAAAAATTCTTATTGTTGATGATGAAAAACCAATTTCAGATATTATTAAATTTAATTTAACTAAAGAAGGTTACGA
AACAGTTACGGCTTTCGATGGTCGTGAAGCTATTGAAAAATTTGAAGAAGAAAATCCTGATTTGATTATTTTGGATTTGA
TGTTGCCAGAATTGGACGGACTTGAAGTCGCAAAAGAAGTTCGTAAAACAAGTCATATTCCTATTATTATGCTATCAGCA
AAAGATAGTGAATTTGATAAAGTTATCGGTCTTGAAATCGGAGCTGACGACTATGTGACAAAACCATTTTCAAACCGTGA
ATTGTTAGCGCGTGTCAAAGCGCACCTTCGCCGCACTGAAAATATCGAATCTGCAGTTGCTGAAGAAAATGCGTCTTCTT
CAAACTCAGAAATCACAATCGGTGACTTGAAAATCTTGCCTGATGCATTTGTGGCACAAAAACGTGGTGAAGACATTGAA
TTAACACACCGTGAGTTTGAATTGTTGCATCATTTGGCAACTCACATGGGACAAGTAATGACACGTGAATACCTTTTGGA
AACTGTCTGGGGTTATGACTATTTTGGTGATGTCCGTACAGTTGACGTAACAATTCGTCGTTTACGTGAAAAAATCGAAG
ACACACCAAGTCGTCCAGAGTATATTTTGACACGTCGTGGTGTCGGATATTACATGAAGTCTTATGAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.678

100

0.907
  micA Streptococcus pneumoniae Cp1015

78.632

99.153

0.78
  covR Streptococcus salivarius strain HSISS4

47.414

98.305

0.466
  covR Lactococcus lactis subsp. lactis strain DGCC12653

46.121

98.305

0.453
  scnR Streptococcus mutans UA159

36.864

100

0.369