Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   KIV12_RS05690 Genome accession   NZ_CP075052
Coordinates   1177628..1178224 (-) Length   198 a.a.
NCBI ID   WP_024719872.1    Uniprot ID   A0A2G8ISB7
Organism   Bacillus altitudinis strain LZP 02     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1172628..1183224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS05665 (KIV12_05665) - 1172714..1173691 (-) 978 WP_235701798.1 2-hydroxyacid dehydrogenase -
  KIV12_RS05670 (KIV12_05670) - 1174245..1174826 (+) 582 WP_025208023.1 beta-class carbonic anhydrase -
  KIV12_RS05675 (KIV12_05675) - 1174864..1176486 (+) 1623 WP_041507806.1 SulP family inorganic anion transporter -
  KIV12_RS05680 (KIV12_05680) - 1176516..1176857 (-) 342 WP_217967806.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  KIV12_RS05685 (KIV12_05685) - 1176994..1177572 (+) 579 WP_024719873.1 TIGR00730 family Rossman fold protein -
  KIV12_RS05690 (KIV12_05690) clpP 1177628..1178224 (-) 597 WP_024719872.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  KIV12_RS05700 (KIV12_05700) - 1178773..1179231 (+) 459 WP_156376640.1 hypothetical protein -
  KIV12_RS05705 (KIV12_05705) - 1179235..1179411 (+) 177 WP_156376639.1 hypothetical protein -
  KIV12_RS05710 (KIV12_05710) - 1179476..1179550 (+) 75 WP_235701799.1 hypothetical protein -
  KIV12_RS05715 (KIV12_05715) - 1179657..1180331 (+) 675 WP_217967807.1 hypothetical protein -
  KIV12_RS05720 (KIV12_05720) - 1180541..1180813 (+) 273 WP_056702858.1 hypothetical protein -
  KIV12_RS05725 (KIV12_05725) - 1181236..1181700 (+) 465 WP_056702854.1 DinB family protein -
  KIV12_RS05730 (KIV12_05730) - 1181951..1182841 (+) 891 WP_056702976.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21832.00 Da        Isoelectric Point: 4.6905

>NTDB_id=567392 KIV12_RS05690 WP_024719872.1 1177628..1178224(-) (clpP) [Bacillus altitudinis strain LZP 02]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNSEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=567392 KIV12_RS05690 WP_024719872.1 1177628..1178224(-) (clpP) [Bacillus altitudinis strain LZP 02]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTATCACAGCTTCTCTTCTTAGAAGCCG
AGGATCCAGAAAAAGATATCTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAATAGTGAAGTGATGATTCACCAACCACTAGGTGGTGCGCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATTCAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8ISB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.929

100

0.929
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.539

96.465

0.652
  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571
  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571
  clpP Lactococcus lactis subsp. cremoris KW2

56.701

97.98

0.556
  clpP Streptococcus pneumoniae Rx1

56.186

97.98

0.551
  clpP Streptococcus pneumoniae D39

56.186

97.98

0.551
  clpP Streptococcus pneumoniae R6

56.186

97.98

0.551
  clpP Streptococcus pneumoniae TIGR4

56.186

97.98

0.551
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.639

97.98

0.535