Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   KHX94_RS16970 Genome accession   NZ_CP074572
Coordinates   3526261..3526569 (+) Length   102 a.a.
NCBI ID   WP_213681508.1    Uniprot ID   -
Organism   Shewanella dokdonensis strain DSM 23626     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3521261..3531569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHX94_RS16945 (KHX94_16940) pspA 3522247..3522930 (+) 684 WP_213681505.1 phage shock protein PspA -
  KHX94_RS16950 (KHX94_16945) pspB 3522952..3523188 (+) 237 WP_212593741.1 envelope stress response membrane protein PspB -
  KHX94_RS16955 (KHX94_16950) pspC 3523178..3523573 (+) 396 WP_213681506.1 envelope stress response membrane protein PspC -
  KHX94_RS16960 (KHX94_16955) - 3523619..3525039 (+) 1421 Protein_3393 YcjX family protein -
  KHX94_RS20725 (KHX94_16960) - 3525036..3525635 (+) 600 WP_244859213.1 hypothetical protein -
  KHX94_RS16965 (KHX94_16965) - 3525557..3526156 (+) 600 WP_244859214.1 TIGR01620 family protein -
  KHX94_RS16970 (KHX94_16970) comEA/comE1 3526261..3526569 (+) 309 WP_213681508.1 ComEA family DNA-binding protein Machinery gene
  KHX94_RS16980 (KHX94_16980) - 3526993..3527271 (-) 279 WP_213681509.1 late competence development ComFB family protein -
  KHX94_RS16985 (KHX94_16985) - 3527711..3528400 (-) 690 WP_213681510.1 DUF2057 domain-containing protein -
  KHX94_RS16990 (KHX94_16990) - 3528410..3529071 (-) 662 Protein_3399 primosomal replication protein -
  KHX94_RS16995 (KHX94_16995) - 3529068..3529838 (-) 771 WP_213681511.1 TSUP family transporter -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10815.73 Da        Isoelectric Point: 9.5953

>NTDB_id=565363 KHX94_RS16970 WP_213681508.1 3526261..3526569(+) (comEA/comE1) [Shewanella dokdonensis strain DSM 23626]
MNRYLKTLMIVAGLLTSAVVIPVMAETSKTDIVTTDVNAQKININTATAAELQLLNGIGAAKAQAIVEYREANGKFTSLE
DLTKVKGIGPKLIEKNAGMLAL

Nucleotide


Download         Length: 309 bp        

>NTDB_id=565363 KHX94_RS16970 WP_213681508.1 3526261..3526569(+) (comEA/comE1) [Shewanella dokdonensis strain DSM 23626]
ATGAACCGATACCTGAAAACGCTGATGATTGTTGCCGGGTTACTGACGTCTGCGGTGGTTATCCCGGTCATGGCCGAAAC
CAGCAAAACTGATATTGTTACCACCGACGTTAATGCGCAGAAAATTAATATCAATACCGCCACCGCGGCTGAATTACAGC
TGCTAAATGGTATTGGCGCCGCCAAAGCTCAAGCGATAGTGGAATACCGCGAAGCCAATGGGAAATTCACTTCGTTGGAA
GATCTCACTAAGGTGAAGGGAATAGGGCCAAAGCTCATCGAGAAGAATGCTGGCATGCTAGCTCTGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

45.946

100

0.5
  comE1/comEA Haemophilus influenzae Rd KW20

45.283

100

0.471
  comEA Acinetobacter baylyi ADP1

66.129

60.784

0.402
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

70.909

53.922

0.382
  comEA Vibrio cholerae strain A1552

61.29

60.784

0.373
  comEA Vibrio cholerae C6706

61.29

60.784

0.373
  comEA Legionella pneumophila str. Paris

42.045

86.275

0.363
  comEA Legionella pneumophila strain ERS1305867

42.045

86.275

0.363