Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KHX94_RS07310 Genome accession   NZ_CP074572
Coordinates   1541427..1542695 (+) Length   422 a.a.
NCBI ID   WP_213682923.1    Uniprot ID   -
Organism   Shewanella dokdonensis strain DSM 23626     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1536427..1547695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHX94_RS07290 (KHX94_07285) ampD 1536826..1537371 (-) 546 WP_213682920.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KHX94_RS07295 (KHX94_07290) nadC 1537570..1538439 (+) 870 WP_213683366.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KHX94_RS07300 (KHX94_07295) - 1539204..1539641 (+) 438 WP_213682921.1 pilin -
  KHX94_RS07305 (KHX94_07300) pilB 1539653..1541359 (+) 1707 WP_213682922.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KHX94_RS07310 (KHX94_07305) pilC 1541427..1542695 (+) 1269 WP_213682923.1 type II secretion system F family protein Machinery gene
  KHX94_RS07315 (KHX94_07310) pilD 1542777..1543691 (+) 915 WP_213682924.1 A24 family peptidase Machinery gene
  KHX94_RS07320 (KHX94_07315) coaE 1543745..1544299 (+) 555 WP_244859373.1 dephospho-CoA kinase -
  KHX94_RS07325 (KHX94_07320) zapD 1544304..1545038 (+) 735 WP_213682925.1 cell division protein ZapD -
  KHX94_RS07330 (KHX94_07325) yacG 1545083..1545304 (+) 222 WP_213682926.1 DNA gyrase inhibitor YacG -
  KHX94_RS07335 (KHX94_07330) mutT 1545310..1545711 (+) 402 WP_213682927.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46241.56 Da        Isoelectric Point: 10.2040

>NTDB_id=565351 KHX94_RS07310 WP_213682923.1 1541427..1542695(+) (pilC) [Shewanella dokdonensis strain DSM 23626]
MATATASRKAVKKTKEVKAPTIYTFEWKGVNRDGKKTSGELRGATAIEIRNQLKNQGIIPKSVSKKSNGLFSKENVKIKP
MDIAVVTRQIATMLAAGVPLVTTLDLVGRGHEKPRMRTLLGTILTDVQSGIPLSEALRPHRLYFDDLYVDLVAAGEHSGA
LDIVFDRIATYKEKSEALKSKIKKAMFYPAAVVVVAIAVTVLLLLFVVPQFETIFANFGAELPAFTQLIINISRGLQSSW
YFFLVGIIVATWSFVRAHRNSQKFRDKIDETVLKIPLIGPILHKGAMARFARTLATTFTAGVPLIEGLESASGASGNAVY
RKALMNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDEMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIGT
LVGSLIIAMYLPIFQMGNIVGQ

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=565351 KHX94_RS07310 WP_213682923.1 1541427..1542695(+) (pilC) [Shewanella dokdonensis strain DSM 23626]
ATGGCTACAGCAACCGCTTCCCGAAAAGCTGTTAAAAAAACCAAAGAAGTCAAAGCGCCCACCATTTATACCTTTGAATG
GAAAGGGGTAAACCGAGACGGCAAGAAAACCAGTGGCGAACTGCGCGGTGCCACCGCCATTGAGATCAGAAATCAATTAA
AAAATCAGGGGATTATCCCTAAGTCCGTCAGTAAAAAATCCAACGGTCTGTTCAGCAAAGAAAACGTTAAAATCAAACCG
ATGGATATCGCGGTGGTCACCCGTCAGATCGCCACCATGCTAGCTGCTGGCGTGCCACTCGTCACCACGCTCGACCTCGT
TGGCCGAGGCCATGAAAAGCCAAGAATGCGTACGCTGTTAGGTACCATTTTGACCGATGTGCAATCAGGGATCCCCTTAT
CTGAAGCATTAAGGCCACATCGGCTCTATTTTGATGATCTCTATGTCGATTTGGTGGCCGCTGGTGAACATTCAGGCGCG
CTCGACATAGTGTTTGACCGTATCGCCACTTACAAAGAAAAATCGGAAGCGCTGAAATCCAAAATCAAAAAAGCCATGTT
TTACCCCGCAGCAGTAGTGGTGGTAGCAATTGCCGTGACTGTTTTACTGCTGTTATTTGTGGTGCCACAGTTTGAAACTA
TTTTCGCCAATTTTGGCGCTGAACTACCTGCTTTTACCCAATTAATCATCAATATCTCCCGTGGTTTACAAAGCTCTTGG
TACTTTTTCCTGGTGGGGATTATTGTGGCTACCTGGTCATTTGTCAGAGCCCACCGTAACTCGCAAAAATTCCGCGATAA
AATCGATGAGACCGTACTGAAAATTCCGCTTATCGGGCCAATTCTACATAAAGGCGCTATGGCGCGTTTTGCCCGCACAC
TGGCAACCACCTTTACCGCCGGGGTACCTTTGATTGAGGGTTTGGAGTCGGCCTCAGGGGCTTCTGGCAATGCGGTGTAT
CGCAAGGCACTGATGAATGTCCGTACCGAAGTCATGGCCGGGATGCAGATGAATGTGGCCATGCGTACCACCAAGCTATT
CCCCGACATGCTGATCCAGATGGTAATGATAGGTGAAGAATCCGGTTCGCTAGATGAGATGCTGAACAAGATTGCCAACA
TCTATGAAATGCAGGTAGATGATGCGGTGGACGGCTTATCCAGCCTGATTGAGCCGATTATGATGGTAGTGATTGGAACC
CTTGTTGGTAGTTTGATTATTGCTATGTACCTACCCATATTCCAGATGGGCAACATTGTAGGCCAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.051

93.839

0.517
  pilC Acinetobacter baylyi ADP1

49.029

97.63

0.479
  pilC Acinetobacter baumannii D1279779

49.14

96.445

0.474
  pilC Legionella pneumophila strain ERS1305867

49.502

95.261

0.472
  pilC Vibrio campbellii strain DS40M4

46.154

95.498

0.441
  pilC Vibrio cholerae strain A1552

46.348

94.076

0.436
  pilG Neisseria meningitidis 44/76-A

42.211

94.313

0.398
  pilG Neisseria gonorrhoeae MS11

42.211

94.313

0.398