Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LILO_RS12200 Genome accession   NC_020450
Coordinates   1054726..1055130 (-) Length   134 a.a.
NCBI ID   WP_225513299.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1049726..1060130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS05140 (lilo_0985) - 1049883..1051415 (+) 1533 WP_015426300.1 Nramp family divalent metal transporter -
  LILO_RS05145 (lilo_0986) - 1051517..1052485 (+) 969 WP_003130649.1 PhoH family protein -
  LILO_RS05150 (lilo_0987) - 1052543..1053022 (+) 480 WP_003130650.1 NUDIX hydrolase -
  LILO_RS05155 (lilo_0988) ybeY 1053174..1053662 (+) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  LILO_RS05160 (lilo_0989) - 1053646..1054101 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  LILO_RS05165 (lilo_0990) - 1054115..1054690 (+) 576 WP_015426301.1 nucleotidyltransferase family protein -
  LILO_RS12200 comFC 1054726..1055130 (-) 405 WP_225513299.1 ComF family protein Machinery gene
  LILO_RS05175 (lilo_0992) comFA 1055373..1056695 (-) 1323 WP_015426303.1 DEAD/DEAH box helicase Machinery gene
  LILO_RS05180 (lilo_0993) - 1056752..1057381 (+) 630 WP_015426304.1 YigZ family protein -
  LILO_RS05185 (lilo_0994) - 1057515..1058012 (+) 498 WP_015426305.1 VanZ family protein -
  LILO_RS05190 (lilo_0995) - 1058060..1059079 (+) 1020 WP_015426306.1 DUF475 domain-containing protein -
  LILO_RS05195 (lilo_0996) - 1059194..1059940 (+) 747 WP_042230284.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15667.08 Da        Isoelectric Point: 9.8798

>NTDB_id=56502 LILO_RS12200 WP_225513299.1 1054726..1055130(-) (comFC) [Lactococcus lactis subsp. lactis IO-1]
MKDYFSQYKFVGDYRLYQIFEPYFKSISPKSSLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=56502 LILO_RS12200 WP_225513299.1 1054726..1055130(-) (comFC) [Lactococcus lactis subsp. lactis IO-1]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAACCCTATTTTAAAAGTAT
TTCCCCAAAATCCTCTTTGGTTCCGATTCCTATTTCACCCAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGACTAAAAGTCCCTACAAAAGTTATATTAATTGATGACATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

66.418

100

0.664
  comFC/cflB Streptococcus mitis SK321

46.043

100

0.478
  comFC/cflB Streptococcus mitis NCTC 12261

46.043

100

0.478
  comFC/cflB Streptococcus pneumoniae TIGR4

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae R6

43.885

100

0.455
  comFC Bacillus subtilis subsp. subtilis str. 168

38.889

100

0.418
  comFC Latilactobacillus sakei subsp. sakei 23K

39.37

94.776

0.373

Multiple sequence alignment