Detailed information NTG0056480

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SITYG_RS00390
• Genome accession: NZ_AP014880
• Coordinates: 68759..69757 (+)
• Length: 332 a.a.
• NCBI ID: WP_009567745.1
• Uniprot ID: -
• Organism: Streptococcus intermedius strain TYG1620
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 63759..74757

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SITYG_RS00370 (SITYG_00530)	-	64219..65388 (+)	1170	WP_096362357.1	SIS domain-containing protein	-
SITYG_RS00375 (SITYG_00540)	lacD	65399..66400 (+)	1002	WP_096362358.1	tagatose-bisphosphate aldolase	-
SITYG_RS00380 (SITYG_00550)	-	66443..67489 (+)	1047	WP_096362359.1	aldose epimerase family protein	-
SITYG_RS00385 (SITYG_00560)	-	67585..68352 (-)	768	WP_096362360.1	cell wall-binding protein	-
SITYG_RS00390 (SITYG_00570)	ruvB	68759..69757 (+)	999	WP_009567745.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SITYG_RS00395 (SITYG_00580)	-	69763..70329 (+)	567	WP_096362361.1	nucleotidyltransferase family protein	-
SITYG_RS00400 (SITYG_00590)	-	71004..71513 (+)	510	WP_096363312.1	modification methylase Sau96I	-
SITYG_RS00405 (SITYG_00600)	-	71504..73000 (+)	1497	WP_096362362.1	primase C-terminal domain-containing protein	-
SITYG_RS00410 (SITYG_00610)	-	73111..73299 (+)	189	WP_096362363.1	hypothetical protein	-
SITYG_RS00415 (SITYG_00620)	-	73308..74099 (+)	792	WP_096363313.1	DNA adenine methylase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37482.85 Da
• Isoelectric Point: 4.4055

>NTDB_id=56480 SITYG_RS00390 WP_009567745.1 68759..69757(+) (ruvB) [Streptococcus intermedius strain TYG1620]
MNRMLDNELMGDEELVERTLRPQYLQEYIGQNKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGSGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYEETDLTEIVERTAEIFEMEITHEAAEELALRSRGTPRIANRLLKRVRDFAQIMGDGLID
NRITDQALTMLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEEQETVEDMYEPYLIQKGFVMRTRAGRVATRK
AYEHLGYEYLEK

Nucleotide

• Length: 999 bp

>NTDB_id=56480 SITYG_RS00390 WP_009567745.1 68759..69757(+) (ruvB) [Streptococcus intermedius strain TYG1620]
ATGAATAGAATGTTAGATAATGAATTGATGGGAGACGAAGAGCTCGTTGAGCGGACATTGCGTCCCCAGTACTTACAAGA
ATATATAGGCCAAAATAAGGTTAAAAATCAACTGAAGATTTTTATTGAGGCAGCCAAGTTACGAGATGAGGCATTAGATC
ATACCCTACTTTTCGGGCCTCCGGGATTGGGTAAAACGACGATGGCTTTTGTGATCGCCAATGAGCTAGGAGTCAATCTC
AAACAGACTTCGGGGCCTGTGATTGAGAAATCGGGCGATTTGGTAGCGATCTTGAATGATCTGGAGCCAGGAGATGTCCT
TTTTATTGATGAAATTCATCGCTTACCCATGTCTGTTGAAGAAGTGCTTTACAGTGCTATGGAAGATTTTTACATTGATA
TTATGATTGGTTCTGGTGAAACCAGTCGCAGTGTTCATTTGGATTTACCACCTTTTACTTTGATTGGGGCAACGACCCGA
GCTGGTATGTTGTCAAATCCCTTGCGGGCTCGCTTTGGTATTACTGGACATATGGAATACTATGAAGAGACGGATTTGAC
CGAGATTGTAGAGCGAACGGCCGAAATCTTTGAGATGGAGATTACACATGAAGCGGCTGAGGAGTTGGCTTTACGTAGCA
GAGGGACCCCTCGAATTGCCAATCGGCTTCTCAAACGCGTACGAGATTTTGCTCAAATCATGGGGGACGGGTTGATTGAT
AATCGGATTACCGATCAAGCCCTGACGATGCTTGATGTGGATCAAGAAGGCTTAGACTATGTGGATCAGAAGATTCTTAA
AACCATGATTGAGGTGTATGGAGGCGGACCTGTTGGTTTAGGAACCTTGTCTGTCAATATTGCAGAAGAGCAAGAAACGG
TGGAAGATATGTATGAGCCATATTTGATTCAGAAAGGCTTTGTTATGCGAACTCGAGCAGGGCGTGTAGCAACGCGTAAA
GCTTATGAGCATTTGGGTTATGAATATTTGGAAAAGTAG

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.361	100	0.904
ruvB	Streptococcus pneumoniae R6	90.06	100	0.901
ruvB	Streptococcus pneumoniae D39	90.06	100	0.901
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.816	98.193	0.587
ruvB	Helicobacter pylori 26695	50.915	98.795	0.503
ruvB	Synechocystis sp. PCC 6803	50.645	93.373	0.473