Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LILO_RS09080 Genome accession   NC_020450
Coordinates   1908851..1909498 (-) Length   215 a.a.
NCBI ID   WP_015426939.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1903851..1914498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS09055 (lilo_1749) atpF 1903920..1904426 (-) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  LILO_RS09060 (lilo_1750) atpB 1904441..1905154 (-) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  LILO_RS09065 (lilo_1751) - 1905199..1905414 (-) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  LILO_RS09070 (lilo_1753) - 1905599..1906375 (-) 777 WP_015426937.1 alpha/beta hydrolase -
  LILO_RS09075 (lilo_1754) comEC 1906660..1908870 (-) 2211 WP_015426938.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LILO_RS09080 (lilo_1755) comEA 1908851..1909498 (-) 648 WP_015426939.1 ComEA family DNA-binding protein Machinery gene
  LILO_RS09085 (lilo_1756) - 1909558..1910919 (-) 1362 WP_015426940.1 ABC transporter permease -
  LILO_RS09090 (lilo_1757) - 1910916..1911848 (-) 933 WP_015426941.1 ABC transporter ATP-binding protein -
  LILO_RS09095 (lilo_1758) - 1911953..1912351 (-) 399 WP_015426942.1 hypothetical protein -
  LILO_RS09100 (lilo_1759) - 1912455..1913018 (-) 564 WP_004255233.1 GNAT family N-acetyltransferase -
  LILO_RS09105 (lilo_1760) - 1913191..1914369 (-) 1179 WP_015426943.1 SLC13 family permease -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23622.83 Da        Isoelectric Point: 5.0062

>NTDB_id=56480 LILO_RS09080 WP_015426939.1 1908851..1909498(-) (comEA) [Lactococcus lactis subsp. lactis IO-1]
MDKILEKVKEYWKMIVLIVCGLIAGGIFYVLTNGQKPTTNLSVEKLSSVSRQSSVSKFSEPNEKSVSKIMVDLKGAVAKP
NVYQISSDERLVDLIKEAGGFTDQADQKSINLSAKLKDEEVIYVPKIGENSSTENTDSSANSVTSQVSTTTEKININQAD
LTELQKLTGVGQKKAQDIIDFRTKNGDFKSLEDLGKVSGFGDKTLEKLKDELCFE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=56480 LILO_RS09080 WP_015426939.1 1908851..1909498(-) (comEA) [Lactococcus lactis subsp. lactis IO-1]
ATGGATAAGATTTTAGAAAAAGTAAAAGAATATTGGAAAATGATTGTTTTAATTGTTTGTGGGCTCATTGCTGGTGGGAT
TTTTTACGTTTTAACCAACGGTCAAAAGCCAACTACAAATCTGTCAGTAGAAAAATTAAGTTCTGTCAGCAGGCAAAGCT
CTGTCAGTAAATTTAGTGAACCTAATGAAAAATCTGTCAGTAAAATTATGGTTGATTTAAAAGGTGCGGTGGCAAAACCT
AATGTCTATCAAATTTCGTCAGATGAACGTCTAGTTGATCTAATTAAAGAAGCTGGTGGTTTTACTGACCAAGCTGACCA
GAAATCAATTAATCTGTCAGCAAAATTAAAAGATGAAGAAGTAATTTATGTCCCAAAAATTGGTGAAAATTCAAGCACAG
AAAATACTGACAGCTCTGCTAATTCGGTCACTAGTCAAGTCTCAACAACCACTGAAAAAATAAATATCAATCAAGCAGAT
TTGACTGAACTACAAAAATTAACAGGTGTTGGTCAGAAAAAAGCTCAAGACATCATCGATTTTCGGACGAAAAATGGTGA
TTTCAAATCACTTGAAGACTTGGGAAAAGTTTCTGGTTTTGGAGATAAAACACTAGAAAAATTGAAAGATGAGTTGTGTT
TTGAATAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(70-125)

Helix-hairpin-helix motif (HHH_3)

(151-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Lactococcus lactis subsp. cremoris KW2

75.688

100

0.767
  comEA/celA/cilE Streptococcus mitis SK321

44.907

100

0.451
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

43.578

100

0.442
  comEA/celA/cilE Streptococcus pneumoniae Rx1

41.553

100

0.423
  comEA/celA/cilE Streptococcus pneumoniae D39

41.553

100

0.423
  comEA/celA/cilE Streptococcus pneumoniae R6

41.553

100

0.423
  comEA/celA/cilE Streptococcus mitis NCTC 12261

41.743

100

0.423
  comEA Latilactobacillus sakei subsp. sakei 23K

36.123

100

0.381

Multiple sequence alignment