Detailed information NTG0056479

Bioinformatically predicted

Overview

• Name: lytF
• Type: Regulator
• Locus tag: SITYG_RS00275
• Genome accession: NZ_AP014880
• Coordinates: 44805..46727 (-)
• Length: 640 a.a.
• NCBI ID: WP_096362344.1
• Uniprot ID: -
• Organism: Streptococcus intermedius strain TYG1620
• Function: cell lysis (predicted from homology) Cell lysis

Genomic Context

Location: 39805..51727

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SITYG_RS00250 (SITYG_00290)	purM	40356..41378 (+)	1023	WP_096363309.1	phosphoribosylformylglycinamidine cyclo-ligase	-
SITYG_RS00255 (SITYG_00300)	purN	41378..41935 (+)	558	WP_096362341.1	phosphoribosylglycinamide formyltransferase	-
SITYG_RS00260 (SITYG_00310)	-	41968..42867 (+)	900	WP_096362342.1	exonuclease domain-containing protein	-
SITYG_RS00270 (SITYG_00320)	purH	43203..44753 (+)	1551	WP_096362343.1	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	-
SITYG_RS00275 (SITYG_00330)	lytF	44805..46727 (-)	1923	WP_096362344.1	GBS Bsp-like repeat-containing protein	Regulator
SITYG_RS00280	-	47099..47974 (+)	876	Protein_33	Abi family protein	-
SITYG_RS00285 (SITYG_00360)	-	48154..49419 (+)	1266	WP_096362345.1	AAA family ATPase	-
SITYG_RS00290 (SITYG_00370)	-	49419..50030 (+)	612	WP_231870238.1	RloB family protein	-
SITYG_RS00295 (SITYG_00380)	purD	50316..51575 (+)	1260	WP_096362347.1	phosphoribosylamine--glycine ligase	-

Sequence

Protein

• Length: 640 a.a.
• Molecular weight: 71373.95 Da
• Isoelectric Point: 8.2785

>NTDB_id=56479 SITYG_RS00275 WP_096362344.1 44805..46727(-) (lytF) [Streptococcus intermedius strain TYG1620]
MKKYSQLFLLSSAFLSILTAQTTVQASDNTPNSSNPTTLASDVTVNVSGNSVSINYIRSQAQNPYTISHAVWSDEDGQDD
LKWYSASQTSTTVDLSQHSGYGTFHVHTYININGKMIGLNGTTFTLNRPTSQTKITTAGQIGQIHFTRNKDQKNSKIVHA
VWSEENGSDDLNWYDAEQEITKFDFSKHKGYGRYFVDTYENKNGKMIYQSGTTFNLEKPNPTIQTSFPEPGIMDIRIKNV
PETIYKLTVPTWSDKNGQDDLQWYAATKNPDGSYNVRVELKKHNYDTGTYHIHVYGESYVKPEFTGLAGTTVQVRSDQLP
SEEEQKPLFSVENINQEQGTYTVKIKETSKSKSIQSVRVPIWSATNQSNIKWYTATDNGDGTFSTTFNIRNHQALSGTYI
NHIYVKYKDGSEHSYATDSVSMSAEQIKTKVAVTKRSIYNYEVTVTDAYGDGNIILPTWSEVNGQDDIQWYTATKTGNGI
YKFTIDTQKHTGSGLFHTHVYRNLNGKMIGLTGTSYQVEKPVISFQPNYAAATTYPKGQCTWGAKALAPWAGNYWGNGGD
WATSARRAGFKTGTTPQVGAIICWTDGSYGHVGVVTHVASNTRIQIQEANYAGKQYIGNFRGWFNPHAAGQGVVSYIYPK

Nucleotide

• Length: 1923 bp

>NTDB_id=56479 SITYG_RS00275 WP_096362344.1 44805..46727(-) (lytF) [Streptococcus intermedius strain TYG1620]
ATGAAGAAATACAGTCAACTATTTTTACTATCTAGTGCCTTTTTGAGCATTCTTACAGCTCAAACAACCGTTCAAGCTTC
GGATAATACTCCGAACAGTTCAAATCCAACAACTCTTGCTAGCGATGTTACTGTCAATGTTTCTGGCAATAGCGTTTCTA
TCAACTACATACGTTCACAAGCCCAAAACCCCTACACCATTTCCCATGCTGTTTGGTCTGATGAAGACGGGCAAGATGAC
CTTAAATGGTATTCCGCATCTCAAACATCAACAACTGTTGATTTGAGCCAACATTCTGGGTACGGTACTTTCCATGTCCA
TACATATATCAACATCAATGGAAAAATGATCGGTTTAAATGGAACGACATTCACTCTGAACAGACCTACTAGTCAAACAA
AAATTACGACAGCTGGGCAGATTGGGCAAATTCATTTTACACGCAATAAAGATCAAAAAAATTCTAAAATTGTTCATGCC
GTTTGGTCTGAAGAAAATGGTAGTGATGATCTCAACTGGTACGATGCTGAACAGGAAATAACTAAATTTGACTTTTCCAA
ACACAAGGGTTATGGGAGATATTTTGTAGATACTTATGAAAATAAAAATGGTAAAATGATTTATCAGTCAGGTACCACTT
TTAACCTTGAAAAACCAAACCCTACTATCCAAACTAGTTTTCCAGAACCTGGCATCATGGATATTCGGATAAAAAATGTC
CCTGAAACAATCTATAAACTTACTGTTCCAACTTGGTCTGATAAAAACGGACAGGATGATCTTCAATGGTATGCAGCTAC
TAAAAATCCTGATGGAAGCTACAATGTTAGAGTTGAGCTAAAAAAACACAACTATGACACAGGAACTTATCACATTCATG
TTTACGGAGAAAGCTATGTCAAACCAGAGTTTACTGGCTTAGCTGGAACTACGGTACAAGTTCGTTCCGATCAATTACCT
TCGGAAGAAGAGCAAAAGCCATTATTCTCTGTTGAAAATATCAATCAAGAACAAGGAACATATACGGTCAAAATTAAGGA
AACTTCAAAATCCAAATCCATTCAATCCGTTCGCGTTCCTATTTGGAGTGCTACAAATCAGAGTAATATCAAATGGTACA
CAGCCACTGACAATGGAGACGGAACTTTTTCAACAACCTTTAATATCCGCAATCATCAGGCTTTGTCTGGAACCTATATC
AATCATATTTATGTAAAATATAAAGACGGTAGTGAGCATAGTTATGCAACAGATTCGGTTAGCATGTCCGCAGAACAGAT
AAAAACGAAAGTAGCTGTCACGAAACGCTCGATCTACAATTATGAAGTAACGGTGACAGATGCTTATGGAGATGGAAATA
TCATCCTGCCTACCTGGTCTGAAGTCAACGGGCAAGATGATATCCAGTGGTACACAGCTACTAAAACTGGAAATGGTATC
TACAAGTTCACTATTGATACGCAAAAACACACTGGTAGCGGGCTTTTCCACACACATGTCTACCGCAATCTCAACGGTAA
AATGATTGGACTAACAGGTACGAGCTATCAAGTAGAGAAACCTGTTATTTCTTTCCAACCCAATTATGCCGCTGCAACGA
CTTATCCAAAAGGGCAATGCACTTGGGGCGCTAAAGCTCTAGCACCTTGGGCTGGCAACTACTGGGGCAATGGTGGCGAT
TGGGCTACTAGTGCCAGACGTGCTGGTTTTAAAACAGGAACAACTCCACAAGTCGGAGCTATTATTTGTTGGACAGATGG
TAGTTACGGACACGTTGGAGTCGTCACTCACGTCGCCTCAAACACACGCATTCAGATTCAAGAGGCAAACTACGCTGGTA
AACAGTACATTGGCAACTTTCGTGGCTGGTTTAATCCCCATGCAGCTGGGCAAGGAGTAGTCAGTTACATTTATCCAAAA
TAA

Domains

Predicted by InterProScan.

• CHAP domain (CHAP) (533-610)

• GBS Bsp-like repeat (GBS_Bsp-like) (438-514)

• GBS Bsp-like repeat (GBS_Bsp-like) (228-298)

• GBS Bsp-like repeat (GBS_Bsp-like) (331-417)

• GBS Bsp-like repeat (GBS_Bsp-like) (65-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
lytF	Streptococcus gordonii strain NCTC7865	44	82.031	0.361