Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | KEM63_RS07205 | Genome accession | NZ_CP073751 |
| Coordinates | 1593642..1593923 (+) | Length | 93 a.a. |
| NCBI ID | WP_223655512.1 | Uniprot ID | - |
| Organism | Halopseudomonas nanhaiensis strain SCS 2-3 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1588642..1598923
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KEM63_RS07185 (KEM63_07145) | - | 1589473..1590078 (+) | 606 | WP_223655508.1 | SPOR domain-containing protein | - |
| KEM63_RS07190 (KEM63_07150) | - | 1590152..1590634 (+) | 483 | WP_223655509.1 | CvpA family protein | - |
| KEM63_RS07195 (KEM63_07155) | purF | 1590689..1592194 (+) | 1506 | WP_223655510.1 | amidophosphoribosyltransferase | - |
| KEM63_RS07200 (KEM63_07160) | - | 1592240..1593451 (+) | 1212 | WP_223655511.1 | O-succinylhomoserine sulfhydrylase | - |
| KEM63_RS07205 (KEM63_07165) | comE1/comEA | 1593642..1593923 (+) | 282 | WP_223655512.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| KEM63_RS07210 (KEM63_07170) | - | 1593959..1595401 (-) | 1443 | WP_223655513.1 | methyl-accepting chemotaxis protein | - |
| KEM63_RS07215 (KEM63_07175) | rnd | 1595618..1596745 (+) | 1128 | WP_223655840.1 | ribonuclease D | - |
| KEM63_RS07220 (KEM63_07180) | - | 1596735..1597028 (+) | 294 | WP_223655514.1 | YcgL domain-containing protein | - |
| KEM63_RS07225 (KEM63_07185) | - | 1597030..1598250 (-) | 1221 | WP_223655515.1 | pyridoxal-dependent decarboxylase, exosortase A system-associated | - |
| KEM63_RS07230 (KEM63_07190) | - | 1598269..1598493 (-) | 225 | WP_223655516.1 | DUF3820 family protein | - |
Sequence
Protein
Download Length: 93 a.a. Molecular weight: 9725.99 Da Isoelectric Point: 4.7166
>NTDB_id=560424 KEM63_RS07205 WP_223655512.1 1593642..1593923(+) (comE1/comEA) [Halopseudomonas nanhaiensis strain SCS 2-3]
MKKLLSTVVLVASAWLVAPAFAETTTPNLSVNINTASAAEIAETLQGVGEAKAQAIVSYREEHGQFESPEALSSVSGIGA
ATVEKNRERIAVQ
MKKLLSTVVLVASAWLVAPAFAETTTPNLSVNINTASAAEIAETLQGVGEAKAQAIVSYREEHGQFESPEALSSVSGIGA
ATVEKNRERIAVQ
Nucleotide
Download Length: 282 bp
>NTDB_id=560424 KEM63_RS07205 WP_223655512.1 1593642..1593923(+) (comE1/comEA) [Halopseudomonas nanhaiensis strain SCS 2-3]
ATGAAAAAACTACTCAGTACCGTTGTTCTTGTTGCTTCTGCATGGCTCGTGGCGCCCGCGTTCGCTGAAACCACAACGCC
GAACTTGTCCGTCAACATCAACACTGCCAGCGCAGCGGAGATCGCCGAGACACTTCAGGGCGTGGGCGAGGCAAAGGCGC
AGGCCATCGTGTCGTATCGGGAAGAGCATGGGCAGTTCGAGTCGCCTGAAGCGCTCAGCTCGGTCAGCGGAATCGGTGCG
GCGACGGTGGAAAAGAACCGCGAGCGGATTGCGGTTCAATAG
ATGAAAAAACTACTCAGTACCGTTGTTCTTGTTGCTTCTGCATGGCTCGTGGCGCCCGCGTTCGCTGAAACCACAACGCC
GAACTTGTCCGTCAACATCAACACTGCCAGCGCAGCGGAGATCGCCGAGACACTTCAGGGCGTGGGCGAGGCAAAGGCGC
AGGCCATCGTGTCGTATCGGGAAGAGCATGGGCAGTTCGAGTCGCCTGAAGCGCTCAGCTCGGTCAGCGGAATCGGTGCG
GCGACGGTGGAAAAGAACCGCGAGCGGATTGCGGTTCAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
45.045 |
100 |
0.538 |
| comEA | Vibrio campbellii strain DS40M4 |
45.918 |
100 |
0.484 |
| comEA | Vibrio cholerae C6706 |
50 |
92.473 |
0.462 |
| comEA | Vibrio cholerae strain A1552 |
50 |
92.473 |
0.462 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
58.73 |
67.742 |
0.398 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
59.677 |
66.667 |
0.398 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
38.71 |
100 |
0.387 |