Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KFF03_RS15295 Genome accession   NZ_CP073745
Coordinates   3367106..3369211 (-) Length   701 a.a.
NCBI ID   WP_255857783.1    Uniprot ID   -
Organism   Bacterioplanoides sp. SCSIO 12839     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3362106..3374211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFF03_RS15280 (KFF03_15205) - 3363950..3365449 (-) 1500 WP_255857780.1 SPOR domain-containing protein -
  KFF03_RS15285 (KFF03_15210) aroB 3365485..3366576 (-) 1092 WP_255857781.1 3-dehydroquinate synthase -
  KFF03_RS15290 aroK 3366592..3367101 (-) 510 WP_255857782.1 shikimate kinase AroK -
  KFF03_RS15295 (KFF03_15215) pilQ 3367106..3369211 (-) 2106 WP_255857783.1 type IV pilus secretin PilQ Machinery gene
  KFF03_RS15300 (KFF03_15220) - 3369214..3369753 (-) 540 WP_255857784.1 pilus assembly protein PilP -
  KFF03_RS15305 (KFF03_15225) - 3369755..3370402 (-) 648 WP_255857785.1 type 4a pilus biogenesis protein PilO -
  KFF03_RS15310 (KFF03_15230) - 3370399..3370953 (-) 555 WP_255857786.1 PilN domain-containing protein -
  KFF03_RS15315 (KFF03_15235) pilM 3370953..3372014 (-) 1062 WP_255860940.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76229.80 Da        Isoelectric Point: 4.4063

>NTDB_id=560388 KFF03_RS15295 WP_255857783.1 3367106..3369211(-) (pilQ) [Bacterioplanoides sp. SCSIO 12839]
MMITKVAGKTMKTIAVMALFFSIALPSWAAELKDIRFASLPGDVTEIELEFDGAPPEAKGYTIEKPARISLDLMGAGSAL
KAKKHQIGTGNARSAMILPTKDRTRLVVNLVTLVDYSTRVNGNTLILSVGSTGAPERFSERADSLAVDSPASKGEMKVVN
VDFRRGELGDGQVQIMLSDDRAAANIRREGGKIIAELENVRLPDALQRRLDVTDFATPVRYVDAKYEDGKTILTIDPVVD
DIEYLAYQADNLLSINVSELPEEDVEERKKQFPFTGEKLSLNFQNIEVRAVLQLIADFTGLNLVASDTVQGSITLRLQNV
PWDQALDLVLKTKALGKRQMGSVLLIAPAEEIAAREKIELEAVKQVEELAPLVTEYMQLNYAKASDLAVLLTSEEGLLSA
RGTAVVDERTNTLLMKDTASNLERVREALVLLDVPVRQVLIEARIVIANTDVGEEMGIQWGGAGYKNNGSNWQTVGGSTQ
TVTEANQILFDRATDGSSDQTISFPQANVVDFGIVENVGAPSLALGYQTADYLLNLELAAIETEGNGEIVSQPRVITSDG
QKAIIESGTEIPYREASSSGAVSISFRSAVLKLEVTPQITPDDRIIMDLIINQDSIGETTINGPAIDTNAVETQVLVDNG
ETVVLGGIFRSEEIKTIRKTPFLGDLPLIGALFRYNNFSSEKSELLVFITPRLVKDSLTSR

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=560388 KFF03_RS15295 WP_255857783.1 3367106..3369211(-) (pilQ) [Bacterioplanoides sp. SCSIO 12839]
ATGATGATTACAAAGGTTGCCGGTAAGACCATGAAAACTATTGCAGTAATGGCGCTGTTTTTCTCAATTGCACTCCCATC
CTGGGCGGCTGAATTAAAAGATATACGCTTTGCATCTCTTCCTGGAGATGTGACAGAAATTGAGTTGGAGTTTGATGGGG
CACCGCCTGAAGCTAAAGGTTACACCATTGAAAAGCCGGCTCGTATTTCCCTTGATTTGATGGGGGCGGGTAGCGCTCTT
AAAGCTAAAAAACACCAAATCGGAACCGGTAATGCCCGCAGTGCCATGATTCTTCCAACTAAGGATCGAACTCGTTTGGT
TGTTAATCTTGTTACCTTGGTTGACTACTCCACCCGTGTAAATGGGAATACATTAATTTTAAGTGTGGGTTCAACAGGAG
CACCTGAGCGCTTTTCTGAACGAGCTGATTCTTTAGCTGTAGATTCTCCCGCATCTAAGGGTGAAATGAAGGTTGTTAAT
GTTGATTTTCGCCGTGGGGAGTTGGGTGATGGTCAAGTTCAGATTATGCTGAGTGACGACCGTGCCGCAGCGAATATCCG
TCGCGAAGGCGGTAAAATTATTGCTGAATTAGAAAATGTAAGGCTGCCTGATGCGTTGCAGCGTCGTTTGGACGTCACTG
ATTTTGCAACACCTGTTCGTTATGTTGATGCCAAATACGAAGATGGTAAAACCATACTAACTATCGACCCTGTTGTTGAT
GATATTGAATATCTAGCTTATCAAGCTGATAACCTCCTTTCGATCAATGTATCTGAATTGCCGGAAGAAGATGTTGAGGA
GCGTAAAAAACAATTTCCATTTACGGGTGAAAAGCTCTCGCTTAATTTCCAGAATATCGAAGTTCGTGCAGTTTTACAGT
TAATTGCAGACTTCACTGGGTTAAACCTCGTTGCTTCCGATACGGTTCAGGGAAGCATAACTCTGCGTTTGCAAAATGTT
CCATGGGATCAGGCCTTGGATTTAGTTTTGAAAACCAAAGCGTTGGGTAAGCGTCAGATGGGCTCAGTTTTATTGATTGC
TCCGGCGGAAGAAATTGCTGCACGCGAAAAAATCGAACTCGAAGCAGTCAAGCAAGTTGAAGAGCTGGCACCATTAGTAA
CTGAGTATATGCAGCTCAATTATGCAAAGGCATCTGATCTTGCTGTGCTGCTGACTTCAGAAGAGGGCTTGTTATCCGCT
CGAGGTACAGCTGTTGTTGATGAGCGTACCAACACACTTTTAATGAAAGACACAGCCAGTAATCTGGAAAGAGTCAGAGA
AGCGTTAGTCTTGCTCGACGTGCCAGTTCGTCAGGTGCTGATTGAAGCTCGCATCGTGATTGCAAATACCGATGTCGGTG
AGGAGATGGGTATTCAATGGGGTGGTGCTGGCTATAAGAATAACGGTAGCAACTGGCAAACTGTCGGTGGCAGCACTCAG
ACTGTCACTGAAGCGAATCAGATTTTATTTGATCGTGCTACAGACGGTAGCAGTGACCAAACGATTTCGTTCCCTCAGGC
AAACGTAGTTGATTTTGGTATCGTTGAAAATGTAGGTGCGCCTTCATTAGCCTTGGGCTATCAAACTGCTGATTATCTAT
TAAACCTTGAGCTGGCAGCTATTGAAACCGAAGGTAACGGCGAGATTGTTTCTCAGCCTCGCGTTATTACCTCTGATGGT
CAAAAAGCTATTATCGAGTCAGGTACTGAAATTCCGTATCGTGAAGCCAGTTCGAGTGGTGCTGTTAGTATTTCTTTCCG
TTCAGCTGTTTTGAAACTTGAGGTTACACCGCAAATTACTCCGGACGATCGAATTATTATGGATCTTATCATTAATCAGG
ATTCAATCGGTGAAACAACGATTAACGGTCCAGCGATTGATACCAATGCGGTAGAAACACAGGTGCTGGTTGATAATGGT
GAGACGGTTGTTCTGGGTGGGATTTTCCGTTCAGAAGAAATTAAAACGATCAGAAAAACTCCTTTCTTAGGTGACTTGCC
TTTGATTGGTGCTTTGTTCCGGTACAACAATTTCTCTTCTGAGAAATCAGAATTGCTGGTATTTATCACTCCTCGCCTGG
TAAAGGATAGCCTGACCAGCCGTTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(302-348)

AMIN domain (AMIN)

(43-128)

Bacterial type II and III secretion system protein (Secretin)

(540-695)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

47.887

100

0.485
  pilQ Acinetobacter baumannii strain A118

41.261

99.572

0.411
  pilQ Acinetobacter baumannii D1279779

41.261

99.572

0.411
  comQ Acinetobacter baylyi ADP1

41.509

98.288

0.408
  pilQ Legionella pneumophila strain ERS1305867

37.758

96.719

0.365
  pilQ Legionella pneumophila strain Lp02

37.758

96.719

0.365