Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | C663_RS11950 | Genome accession | NC_020244 |
| Coordinates | 2405515..2405850 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis XF-1 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2400515..2410850
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C663_RS11930 (C663_2340) | gcvT | 2401107..2402195 (-) | 1089 | WP_015384081.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| C663_RS11935 (C663_2341) | yqhH | 2402637..2404310 (+) | 1674 | WP_015384082.1 | SNF2-related protein | - |
| C663_RS11940 (C663_2342) | yqhG | 2404331..2405125 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| C663_RS11945 (C663_2343) | sinI | 2405308..2405481 (+) | 174 | WP_003230187.1 | anti-repressor SinI family protein | Regulator |
| C663_RS11950 (C663_2344) | sinR | 2405515..2405850 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| C663_RS11955 (C663_2345) | tasA | 2405943..2406728 (-) | 786 | WP_003230183.1 | biofilm matrix protein TasA | - |
| C663_RS11960 (C663_2346) | sipW | 2406792..2407364 (-) | 573 | WP_080030740.1 | signal peptidase I | - |
| C663_RS11965 (C663_2347) | tapA | 2407348..2408109 (-) | 762 | WP_015384085.1 | amyloid fiber anchoring/assembly protein TapA | - |
| C663_RS11970 (C663_2348) | yqzG | 2408379..2408705 (+) | 327 | WP_015384086.1 | YqzG/YhdC family protein | - |
| C663_RS11975 (C663_2349) | spoIIT | 2408747..2408926 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| C663_RS11980 (C663_2350) | comGG | 2408998..2409372 (-) | 375 | WP_014480253.1 | ComG operon protein ComGG | Machinery gene |
| C663_RS11985 (C663_2351) | comGF | 2409373..2409756 (-) | 384 | WP_015384087.1 | ComG operon protein ComGF | Machinery gene |
| C663_RS11990 (C663_2352) | comGE | 2409782..2410129 (-) | 348 | WP_015384088.1 | ComG operon protein 5 | Machinery gene |
| C663_RS11995 (C663_2353) | comGD | 2410113..2410544 (-) | 432 | WP_015384089.1 | comG operon protein ComGD | Machinery gene |
| C663_RS12000 (C663_2354) | comGC | 2410534..2410830 (-) | 297 | WP_014477332.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=56005 C663_RS11950 WP_003226345.1 2405515..2405850(+) (sinR) [Bacillus subtilis XF-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=56005 C663_RS11950 WP_003226345.1 2405515..2405850(+) (sinR) [Bacillus subtilis XF-1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |