Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C663_RS10810 Genome accession   NC_020244
Coordinates   2195002..2195622 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis XF-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2190002..2200622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS10770 (C663_2096) ypqE 2191135..2191641 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  C663_RS10775 (C663_2097) ypqA 2191779..2192198 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  C663_RS10780 (C663_2098) yppG 2192219..2192596 (-) 378 WP_014477159.1 YppG family protein -
  C663_RS10785 (C663_2099) yppF 2192783..2192971 (+) 189 WP_003230690.1 YppF family protein -
  C663_RS10790 (C663_2100) yppE 2193010..2193381 (-) 372 WP_015483369.1 YppE family protein -
  C663_RS10795 (C663_2101) yppD 2193427..2193672 (-) 246 WP_004398488.1 YppD family protein -
  C663_RS10800 (C663_2102) sspM 2193870..2193974 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C663_RS10805 (C663_2103) yppC 2193999..2194961 (-) 963 WP_015383945.1 DUF2515 domain-containing protein -
  C663_RS10810 (C663_2104) recU 2195002..2195622 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  C663_RS10815 (C663_2105) ponA 2195644..2198394 (+) 2751 WP_015383947.1 PBP1A family penicillin-binding protein -
  C663_RS10820 (C663_2106) ypoC 2198470..2198964 (-) 495 WP_015383948.1 YpoC family protein -
  C663_RS10825 (C663_2107) nth 2198961..2199620 (-) 660 WP_015483371.1 endonuclease III -
  C663_RS10830 (C663_2108) dnaD 2199639..2200337 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=56001 C663_RS10810 WP_004399067.1 2195002..2195622(+) (recU) [Bacillus subtilis XF-1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=56001 C663_RS10810 WP_004399067.1 2195002..2195622(+) (recU) [Bacillus subtilis XF-1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment