Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   SCSC_RS08240 Genome accession   NZ_AP014647
Coordinates   1683325..1683651 (-) Length   108 a.a.
NCBI ID   WP_003070783.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1678325..1688651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS08225 (SCSC_1693) glmS 1678838..1680652 (-) 1815 WP_006269970.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  SCSC_RS08230 (SCSC_1694) - 1681041..1682240 (-) 1200 WP_006269979.1 acetate kinase -
  SCSC_RS08235 (SCSC_1695) comGH 1682287..1683240 (-) 954 WP_006269998.1 class I SAM-dependent methyltransferase Machinery gene
  SCSC_RS08240 (SCSC_1696) comGG/cglG 1683325..1683651 (-) 327 WP_003070783.1 competence type IV pilus minor pilin ComGG Machinery gene
  SCSC_RS08245 (SCSC_1697) comGF/cglF 1683632..1684069 (-) 438 WP_006270001.1 competence type IV pilus minor pilin ComGF Machinery gene
  SCSC_RS08250 (SCSC_1698) comGE/cglE 1684053..1684346 (-) 294 WP_006269989.1 competence type IV pilus minor pilin ComGE Machinery gene
  SCSC_RS08255 (SCSC_1699) comGD 1684318..1684716 (-) 399 WP_006269995.1 competence type IV pilus minor pilin ComGD Machinery gene
  SCSC_RS08260 (SCSC_1700) comGC 1684706..1685023 (-) 318 WP_006269985.1 competence type IV pilus major pilin ComGC Machinery gene
  SCSC_RS08265 (SCSC_1701) comGB 1685020..1686042 (-) 1023 WP_037565861.1 competence type IV pilus assembly protein ComGB Machinery gene
  SCSC_RS08270 (SCSC_1702) comGA 1685984..1686925 (-) 942 WP_006269992.1 competence type IV pilus ATPase ComGA Machinery gene
  SCSC_RS08275 (SCSC_1703) - 1686995..1687360 (-) 366 WP_006269973.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12935.74 Da        Isoelectric Point: 10.0181

>NTDB_id=56000 SCSC_RS08240 WP_003070783.1 1683325..1683651(-) (comGG/cglG) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MWKQRVKAGIMLYALFITAVFSLLLQFYLHRQTANHRNFTLNRERIQAYAMAAVANENPKQRNFEQGYVQDQKDEKEFIL
TVTMNTGRRYQFRFPLMHSNQTNDNLDE

Nucleotide


Download         Length: 327 bp        

>NTDB_id=56000 SCSC_RS08240 WP_003070783.1 1683325..1683651(-) (comGG/cglG) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
GTGTGGAAACAAAGAGTTAAAGCAGGTATTATGCTCTATGCCCTTTTTATAACAGCTGTCTTTAGCTTACTTTTGCAATT
TTACCTTCATCGGCAAACTGCAAATCACAGGAATTTCACCCTAAACCGAGAGCGAATACAGGCTTATGCAATGGCAGCTG
TAGCAAATGAAAATCCTAAACAAAGGAATTTTGAACAGGGGTATGTGCAAGATCAGAAAGATGAGAAAGAGTTCATCCTG
ACAGTAACAATGAACACTGGTCGCCGTTATCAATTTCGCTTCCCACTTATGCATTCCAATCAAACCAATGACAATTTAGA
CGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae D39

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae R6

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae TIGR4

43

92.593

0.398
  comGG/cglG Streptococcus mitis NCTC 12261

42.424

91.667

0.389
  comGG/cglG Streptococcus mitis SK321

41.414

91.667

0.38

Multiple sequence alignment