NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	KEM15_RS06960	Genome accession	NZ_CP073632
Coordinates	1342949..1343539 (-)	Length	196 a.a.
NCBI ID	WP_274504107.1	Uniprot ID	-
Organism	Streptococcus parasuis strain NN1
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1337949..1348539

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KEM15_RS06935 (KEM15_06820)	-	1338329..1339093 (-)	765	WP_024391941.1	ABC transporter ATP-binding protein	-
KEM15_RS06940 (KEM15_06825)	-	1339093..1340040 (-)	948	WP_274504105.1	branched-chain amino acid ABC transporter permease	-
KEM15_RS06945 (KEM15_06830)	-	1340043..1340930 (-)	888	WP_274504106.1	branched-chain amino acid ABC transporter permease	-
KEM15_RS06950 (KEM15_06835)	-	1341211..1342380 (-)	1170	WP_217374003.1	ABC transporter substrate-binding protein	-
KEM15_RS06955 (KEM15_06840)	-	1342545..1342832 (-)	288	WP_217374004.1	DUF2129 domain-containing protein	-
KEM15_RS06960 (KEM15_06845)	clpP	1342949..1343539 (-)	591	WP_274504107.1	ATP-dependent Clp protease proteolytic subunit	Regulator
KEM15_RS06965 (KEM15_06850)	upp	1343661..1344290 (-)	630	WP_024391947.1	uracil phosphoribosyltransferase	-
KEM15_RS06970 (KEM15_06855)	-	1344370..1345986 (-)	1617	WP_217374006.1	alpha-glucosidase	-
KEM15_RS06975 (KEM15_06860)	gtfA	1346056..1347504 (-)	1449	WP_274504108.1	sucrose phosphorylase	-
KEM15_RS06980 (KEM15_06865)	-	1347573..1348403 (-)	831	WP_171989738.1	carbohydrate ABC transporter permease	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21556.75 Da Isoelectric Point: 5.7074

                                >NTDB_id=559520 KEM15_RS06960 WP_274504107.1 1342949..1343539(-) (clpP) [Streptococcus parasuis strain NN1]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKADVQTIVMGTAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGTGGGTQQTDMAIAAEHLLNTRNKLEKILAENSGK

TVKQIHKDAERDYWMSAEETLAYGFIDQIMYNTKTK

Nucleotide

Download Length: 591 bp

                                >NTDB_id=559520 KEM15_RS06960 WP_274504107.1 1342949..1343539(-) (clpP) [Streptococcus parasuis strain NN1]

ATGATTCCAGTAGTTATTGAACAAACTAGTCGCGGTGAGCGCTCGTATGATATTTATTCACGTTTGCTGAAAGACCGCAT

CATTATGTTGACAGGTCCGGTTGAGGACAATATGGCCAATTCGATTATTGCCCAATTGCTTTTCCTAGATGCACAAGATC

CAACAAAAGATATTTATCTCTATGTAAATACACCAGGGGGTTCTGTTTCTGCAGGTCTTGCCATCGTGGATACAATGAAC

TTCATTAAAGCAGACGTACAGACAATTGTAATGGGTACTGCAGCAAGTATGGGAACAATCATTGCTTCAAGTGGTACAAA

AGGCAAACGTTTCATGCTTCCTAATGCAGAATACCTGATTCACCAACCAATGGGAGGCACTGGTGGTGGTACTCAGCAAA

CTGACATGGCAATTGCAGCAGAACACCTCTTAAATACTCGTAACAAGTTAGAAAAAATCTTGGCGGAAAATTCTGGTAAG

ACAGTCAAACAAATCCATAAGGATGCAGAACGTGACTATTGGATGTCTGCTGAAGAAACCTTGGCATACGGCTTTATCGA

CCAAATTATGTATAATACAAAGACTAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-191)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pyogenes JRS4	91.837	100	0.918
clpP	Streptococcus pyogenes MGAS315	91.837	100	0.918
clpP	Streptococcus mutans UA159	89.286	100	0.893
clpP	Streptococcus thermophilus LMD-9	87.755	100	0.878
clpP	Streptococcus thermophilus LMG 18311	87.755	100	0.878
clpP	Streptococcus pneumoniae R6	89.583	97.959	0.878
clpP	Streptococcus pneumoniae Rx1	89.583	97.959	0.878
clpP	Streptococcus pneumoniae D39	89.583	97.959	0.878
clpP	Streptococcus pneumoniae TIGR4	89.583	97.959	0.878
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	84.184	100	0.842
clpP	Lactococcus lactis subsp. cremoris KW2	83.673	100	0.837
clpP	Bacillus subtilis subsp. subtilis str. 168	58.163	100	0.582
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.421	96.939	0.566

Detailed information NTG0559520