Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KDW95_RS11110 Genome accession   NZ_CP073347
Coordinates   2460939..2461226 (-) Length   95 a.a.
NCBI ID   WP_255856328.1    Uniprot ID   -
Organism   Marinobacterium rhizophilum strain D13-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2455939..2466226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDW95_RS11100 (KDW95_11065) - 2456735..2459596 (+) 2862 WP_255856326.1 FAD-binding and (Fe-S)-binding domain-containing protein -
  KDW95_RS11105 (KDW95_11070) - 2459732..2460625 (+) 894 WP_255856327.1 AEC family transporter -
  KDW95_RS11110 (KDW95_11075) comEA 2460939..2461226 (-) 288 WP_255856328.1 helix-hairpin-helix domain-containing protein Machinery gene
  KDW95_RS11115 (KDW95_11080) pyrF 2461314..2462024 (-) 711 WP_255856329.1 orotidine-5'-phosphate decarboxylase -
  KDW95_RS11120 (KDW95_11085) - 2462276..2462581 (-) 306 WP_255856330.1 lipopolysaccharide assembly LapA domain-containing protein -
  KDW95_RS11125 (KDW95_11090) ihfB 2462617..2462910 (-) 294 WP_067298806.1 integration host factor subunit beta -
  KDW95_RS11130 (KDW95_11095) rpsA 2463019..2464701 (-) 1683 WP_255856331.1 30S ribosomal protein S1 -
  KDW95_RS11135 (KDW95_11100) cmk 2464730..2465428 (-) 699 WP_255856332.1 (d)CMP kinase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9911.34 Da        Isoelectric Point: 4.8542

>NTDB_id=559123 KDW95_RS11110 WP_255856328.1 2460939..2461226(-) (comEA) [Marinobacterium rhizophilum strain D13-1]
MNTRILRALLLTFCLAFLPLSAAQADTLDINTATADQLSSVMVGVGPAKAQAIVDYRDSNGPFGSIDELSSVKGIGPATV
DKNRDFISVTPASAK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=559123 KDW95_RS11110 WP_255856328.1 2460939..2461226(-) (comEA) [Marinobacterium rhizophilum strain D13-1]
ATGAACACTCGAATACTTCGTGCTTTGCTACTGACGTTCTGTCTTGCTTTTCTTCCCCTGTCCGCCGCCCAGGCGGATAC
GCTGGATATCAATACCGCCACCGCCGACCAGCTTTCCAGTGTAATGGTGGGTGTTGGGCCAGCCAAGGCCCAGGCCATTG
TGGACTATCGCGATAGTAACGGGCCCTTCGGCAGTATCGACGAGCTCAGTTCCGTCAAGGGTATTGGTCCGGCGACGGTG
GACAAGAACCGTGACTTCATCAGCGTGACGCCGGCATCCGCGAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(25-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

47.917

100

0.484
  comEA Vibrio cholerae strain A1552

47.917

100

0.484
  comEA Vibrio parahaemolyticus RIMD 2210633

46.667

94.737

0.442
  comEA Vibrio campbellii strain DS40M4

41.758

95.789

0.4
  comE Neisseria gonorrhoeae MS11

39.326

93.684

0.368
  comE Neisseria gonorrhoeae MS11

39.326

93.684

0.368
  comE Neisseria gonorrhoeae MS11

39.326

93.684

0.368
  comE Neisseria gonorrhoeae MS11

39.326

93.684

0.368
  comEA Legionella pneumophila str. Paris

35

100

0.368
  comEA Legionella pneumophila strain ERS1305867

35

100

0.368