Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KD050_RS17965 Genome accession   NZ_CP073315
Coordinates   3679541..3680797 (+) Length   418 a.a.
NCBI ID   WP_211893682.1    Uniprot ID   -
Organism   Psychrobacillus sp. INOP01     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3674541..3685797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD050_RS17940 (KD050_17940) yfmH 3675018..3676319 (+) 1302 WP_211893678.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  KD050_RS17945 (KD050_17945) ymfI 3676312..3677043 (+) 732 WP_211893679.1 elongation factor P 5-aminopentanone reductase -
  KD050_RS17950 (KD050_17950) - 3677213..3678019 (+) 807 WP_211893680.1 YmfK family protein -
  KD050_RS17955 (KD050_17955) - 3678036..3678893 (+) 858 WP_211893681.1 helix-turn-helix domain-containing protein -
  KD050_RS17960 (KD050_17960) pgsA 3678948..3679526 (+) 579 WP_211896348.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KD050_RS17965 (KD050_17965) cinA 3679541..3680797 (+) 1257 WP_211893682.1 competence/damage-inducible protein A Machinery gene
  KD050_RS17970 (KD050_17970) recA 3680977..3682047 (+) 1071 WP_370627144.1 recombinase RecA Machinery gene
  KD050_RS17975 (KD050_17975) rny 3682885..3684441 (+) 1557 WP_211893683.1 ribonuclease Y -
  KD050_RS17980 (KD050_17980) - 3684535..3685332 (+) 798 WP_211893684.1 TIGR00282 family metallophosphoesterase -
  KD050_RS17985 (KD050_17985) - 3685418..3685684 (+) 267 WP_090562386.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45973.10 Da        Isoelectric Point: 4.9337

>NTDB_id=559023 KD050_RS17965 WP_211893682.1 3679541..3680797(+) (cinA) [Psychrobacillus sp. INOP01]
MKAEIIAVGSELLLGQISNTNARFISTQLAEIGLDVYYHTVVGDNADRLLESIQIAEKRADLIIFTGGLGPTKDDLTKET
IAKHLGMNLVLDNHAIMYIEDFFKRMDRKMTENNKKQALVLEGCTVLENKHGMAPGMLLSTESHSYILLPGPPKEMEPMF
QFEAKPLLPKLLLDESVIMSHVIRFYGIGEAELETEVQDLLDNQTNPTLAPLASDGEVTLRLTAKSNSEEEAWKKIEILQ
AEILNRVGKFVYGYNNDSLPSKLREILIENDLTISAAESMTAGLFQSELAAVPGMGEALVGGMITYTEDVKIKQLGVHAD
IIEKYSVVSSQCAEQMALRVKEIFQTDIGVGITGAAGPDGHGGQPAGTIWIGIALGDIKPVTYKLNLSGLRNTNRIRAVK
FTIYYLIRLLREQKLAGI

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=559023 KD050_RS17965 WP_211893682.1 3679541..3680797(+) (cinA) [Psychrobacillus sp. INOP01]
ATGAAAGCAGAAATTATTGCAGTAGGCTCAGAACTATTACTAGGGCAGATTTCTAATACAAATGCCCGTTTTATATCCAC
TCAACTTGCAGAAATCGGTCTGGACGTATACTATCATACGGTAGTCGGAGATAATGCGGATAGGCTGTTAGAATCGATTC
AAATAGCAGAAAAACGAGCAGACCTTATTATTTTCACGGGCGGATTAGGTCCTACAAAAGATGATTTAACAAAGGAAACT
ATAGCGAAGCATTTAGGTATGAACTTAGTGCTAGATAATCATGCAATCATGTATATTGAAGATTTCTTTAAGCGCATGGA
TCGTAAAATGACGGAAAACAACAAAAAACAGGCACTTGTTTTAGAAGGGTGCACTGTACTTGAGAATAAACATGGAATGG
CACCGGGAATGTTACTCTCTACGGAAAGTCATTCATATATACTACTTCCCGGACCTCCAAAAGAGATGGAGCCTATGTTC
CAATTCGAGGCGAAGCCATTATTACCGAAGCTCCTTTTGGATGAAAGTGTTATTATGTCCCATGTTATTCGCTTCTATGG
AATAGGGGAAGCAGAATTGGAAACAGAAGTGCAGGATCTGCTAGACAACCAAACGAATCCAACACTTGCACCACTTGCCT
CTGATGGTGAGGTTACACTTCGATTAACGGCAAAAAGTAATTCGGAAGAGGAAGCTTGGAAAAAGATTGAAATATTACAA
GCTGAAATCCTCAACCGTGTTGGCAAATTTGTTTATGGCTATAATAATGATTCTTTACCATCGAAGCTGAGGGAAATCCT
TATTGAAAATGACCTCACTATCTCAGCGGCTGAGAGTATGACGGCAGGACTATTCCAATCGGAGCTTGCTGCAGTACCGG
GAATGGGAGAAGCTTTGGTAGGTGGAATGATAACCTATACAGAAGACGTGAAGATCAAGCAATTAGGTGTCCATGCTGAT
ATTATCGAGAAATATAGCGTAGTTTCTAGTCAATGTGCAGAGCAAATGGCACTTCGAGTAAAAGAAATATTTCAGACTGA
TATAGGTGTAGGCATTACTGGAGCAGCTGGTCCGGATGGTCATGGTGGTCAACCAGCGGGTACAATTTGGATTGGAATCG
CATTAGGTGATATTAAGCCGGTAACGTATAAACTTAATCTATCAGGTTTACGAAACACGAATAGAATTAGGGCAGTGAAA
TTTACGATCTATTATTTGATACGTTTACTGCGAGAACAAAAATTAGCAGGAATTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.269

98.804

0.526
  cinA Streptococcus mitis SK321

46.118

100

0.469
  cinA Streptococcus mitis NCTC 12261

45.647

100

0.464
  cinA Streptococcus pneumoniae TIGR4

45.412

100

0.462
  cinA Streptococcus pneumoniae R6

45.176

100

0.459
  cinA Streptococcus pneumoniae Rx1

45.176

100

0.459
  cinA Streptococcus pneumoniae D39

44.941

100

0.457
  cinA Streptococcus mutans UA159

46.032

90.431

0.416