Detailed information NTG0558754

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: KCL43_RS00715
• Genome accession: NZ_CP073275
• Coordinates: 126551..127585 (+)
• Length: 344 a.a.
• NCBI ID: WP_228294477.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain IN-6992
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 121551..132585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KCL43_RS10465	-	122665..122781 (+)	117	WP_231145532.1	hypothetical protein	-
KCL43_RS00700 (KCL43_00700)	-	122846..124849 (+)	2004	WP_165623678.1	DUF1430 domain-containing protein	-
KCL43_RS00705 (KCL43_00705)	-	124851..125498 (+)	648	WP_115266548.1	ATP-binding cassette domain-containing protein	-
KCL43_RS00710 (KCL43_00710)	comGA/cglA	125680..126618 (+)	939	WP_115267238.1	competence type IV pilus ATPase ComGA	Machinery gene
KCL43_RS00715 (KCL43_00715)	comYB	126551..127585 (+)	1035	WP_228294477.1	competence type IV pilus assembly protein ComGB	Machinery gene
KCL43_RS00720 (KCL43_00720)	comGC/cglC	127586..127909 (+)	324	WP_012514782.1	competence type IV pilus major pilin ComGC	Machinery gene
KCL43_RS00725 (KCL43_00725)	comGD	127887..128312 (+)	426	WP_012514783.1	competence type IV pilus minor pilin ComGD	-
KCL43_RS00730 (KCL43_00730)	comGE	128317..128559 (+)	243	WP_207618698.1	competence type IV pilus minor pilin ComGE	-
KCL43_RS00735 (KCL43_00735)	comYF	128546..128980 (+)	435	WP_111677651.1	competence type IV pilus minor pilin ComGF	Machinery gene
KCL43_RS00740 (KCL43_00740)	comGG	128958..129320 (+)	363	WP_111677652.1	competence type IV pilus minor pilin ComGG	-
KCL43_RS00745 (KCL43_00745)	-	129387..130728 (+)	1342	Protein_113	IS3 family transposase	-
KCL43_RS00750 (KCL43_00750)	comYH	130813..131766 (+)	954	WP_012514788.1	class I SAM-dependent methyltransferase	Machinery gene

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 39496.76 Da
• Isoelectric Point: 9.3195

>NTDB_id=558754 KCL43_RS00715 WP_228294477.1 126551..127585(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain IN-6992]
MISFLQRDISIAGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLVDMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLVFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLLLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQHMGDVF

Nucleotide

• Length: 1035 bp

>NTDB_id=558754 KCL43_RS00715 WP_228294477.1 126551..127585(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain IN-6992]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATAGCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAAGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGTTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTGGTTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGTTTTTGTTTGCTTTTGCTGTTGCTAATTGGCTCTTTTTACCTATATGCCAGATCTTG
TAGTCGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (29-147)

• Type II secretion system (T2SS), protein F (T2SSF) (215-335)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.277	98.547	0.535
comYB	Streptococcus mutans UA159	54.277	98.547	0.535
comYB	Streptococcus gordonii str. Challis substr. CH1	52.059	98.837	0.515
comGB/cglB	Streptococcus mitis NCTC 12261	48.512	97.674	0.474
comGB/cglB	Streptococcus mitis SK321	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae Rx1	47.748	96.802	0.462
comGB/cglB	Streptococcus pneumoniae D39	47.748	96.802	0.462
comGB/cglB	Streptococcus pneumoniae R6	47.748	96.802	0.462
comGB/cglB	Streptococcus pneumoniae TIGR4	47.748	96.802	0.462
comGB	Lactococcus lactis subsp. cremoris KW2	46.313	98.547	0.456