Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   KCL43_RS00735 Genome accession   NZ_CP073275
Coordinates   128546..128980 (+) Length   144 a.a.
NCBI ID   WP_111677651.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain IN-6992     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 129387..130728 128546..128980 flank 407


Gene organization within MGE regions


Location: 128546..130728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCL43_RS00735 (KCL43_00735) comYF 128546..128980 (+) 435 WP_111677651.1 competence type IV pilus minor pilin ComGF Machinery gene
  KCL43_RS00740 (KCL43_00740) comGG 128958..129320 (+) 363 WP_111677652.1 competence type IV pilus minor pilin ComGG -
  KCL43_RS00745 (KCL43_00745) - 129387..130728 (+) 1342 Protein_113 IS3 family transposase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16178.78 Da        Isoelectric Point: 10.3341

>NTDB_id=558756 KCL43_RS00735 WP_111677651.1 128546..128980(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain IN-6992]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGIRNNRLYVEKDK
KALSFGQVKGHDFRKAAGNGRGYQPMLFGLSSSQITAVGQQVIIKLKWQSGLERTFIYAFQEKG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=558756 KCL43_RS00735 WP_111677651.1 128546..128980(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain IN-6992]
TTGAAAGACAGTAGGTTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACTAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCCTACAGGGTATCCGCAATAATAGGCTATATGTTGAAAAGGACAAG
AAGGCTTTGTCCTTTGGACAGGTCAAGGGTCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTTATCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

52.083

100

0.521
  comYF Streptococcus mutans UA159

51.389

100

0.514
  comGF/cglF Streptococcus mitis SK321

50.365

95.139

0.479
  comGF Lactococcus lactis subsp. cremoris KW2

47.143

97.222

0.458
  comGF/cglF Streptococcus mitis NCTC 12261

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae Rx1

46.715

95.139

0.444
  comGF/cglF Streptococcus pneumoniae D39

46.715

95.139

0.444
  comGF/cglF Streptococcus pneumoniae R6

46.715

95.139

0.444
  comGF/cglF Streptococcus pneumoniae TIGR4

46.715

95.139

0.444