Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KCG56_RS00310 Genome accession   NZ_CP073116
Coordinates   78573..80069 (-) Length   498 a.a.
NCBI ID   WP_254321539.1    Uniprot ID   A0A9X9HYU3
Organism   Neisseria subflava strain TT0073     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 73573..85069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS00285 (KCG56_00310) comE 74732..75019 (+) 288 WP_254321153.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG56_RS00290 (KCG56_00315) comP 75285..75698 (+) 414 WP_254322190.1 type IV pilin protein Machinery gene
  KCG56_RS00295 (KCG56_00320) - 75767..76590 (-) 824 Protein_52 undecaprenyl-diphosphate phosphatase -
  KCG56_RS00300 (KCG56_00325) dsbA1 76635..77276 (-) 642 WP_254321537.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KCG56_RS00305 (KCG56_00330) - 77288..78418 (-) 1131 WP_254321538.1 SPOR domain-containing protein -
  KCG56_RS00310 (KCG56_00335) comM 78573..80069 (-) 1497 WP_254321539.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KCG56_RS00315 (KCG56_00340) - 80083..80403 (-) 321 WP_254321540.1 accessory factor UbiK family protein -
  KCG56_RS00320 (KCG56_00345) - 80528..81592 (-) 1065 WP_254321541.1 DUF1176 domain-containing protein -
  KCG56_RS00325 (KCG56_00350) metK 81764..82933 (-) 1170 WP_254321542.1 methionine adenosyltransferase -
  KCG56_RS00330 (KCG56_00355) - 83326..84201 (+) 876 WP_254321543.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53835.83 Da        Isoelectric Point: 7.5739

>NTDB_id=558062 KCG56_RS00310 WP_254321539.1 78573..80069(-) (comM) [Neisseria subflava strain TT0073]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQINPEKLSQYEFAGELALSGLLRPVRGALAMAWQGMQAGRSFVLPQENAEQAAVMRGIAVYGARSL
GEVAAHLNGIEPLTQTECKLTQRPSEQSKIPDLADVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSSSSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPESVARYRNKISGPLLDRIDLTIEVPSLSAAELIQQ
EAGESSATVLERVTAARKIQYNRQGKVNAELSVGELDGKARIQKEAQEALGTMLEKLSLSARSFHRIMRVARTLADLAGD
EEVSKTHVMKAISFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=558062 KCG56_RS00310 WP_254321539.1 78573..80069(-) (comM) [Neisseria subflava strain TT0073]
ATGTCGCTTGCTTTGGTTTACAGCCGCGCCTTAAGCGGCATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCTTGCCACATTTCAATATCGTCGGCTTGCCCGATACTGAAGTCAAAGAAAGCCGCGACCGTGTGCGTGCCGCCATTA
TTCAAAGCGGCTTCGATTTTCCCGCCAAGAAAATTACCGTCAACCTCGCACCGGCCGACCTCCCAAAAGAATCCGGCCGT
TTCGATTTGCCGATTGCCTTAGGTATTCTTGCCGCTTCGGGACAAATTAACCCTGAAAAGCTCTCGCAATATGAGTTTGC
CGGAGAATTGGCACTGTCCGGCCTGCTGCGTCCCGTACGCGGCGCGCTGGCTATGGCATGGCAGGGAATGCAGGCAGGCC
GTTCGTTCGTTTTGCCGCAAGAAAATGCCGAACAGGCTGCCGTCATGCGCGGTATCGCGGTTTATGGCGCACGTTCTTTA
GGCGAAGTGGCCGCGCATTTAAACGGTATCGAACCGTTGACACAAACTGAATGCAAGCTGACGCAAAGGCCGTCTGAACA
AAGTAAAATTCCTGATTTAGCCGATGTTAAAGGCCAACATACCGCCCGCCTTGCTTTGGAAATCGCAGCGGCAGGCGGAC
ACAGCCTGCTGATGATGGGCCCTCCGGGTACGGGTAAATCCATGCTTTCGCAACGTTTACCCGGAATCCTTCCGCCTTTG
ACCGAAGACGAATTGGTCGAAGTATGGGCTTTGCGTTCGCTCCTACCCAACCATCAACAGCAACTCGACAGCAACCGTCC
TTTCCGCAGCCCTCATCACAGCTCCAGCTCGGCTGCCATGGTCGGCGGCGGTTCAGACCCACGTCCGGGCGAAATTTCAT
TGGCGCACCACGGAGTGTTGTTTTTAGACGAATTGCCCGAGTTTGACCGTAAAGTATTAGAAGTATTGCGCGAGCCTTTG
GAAAACGGCGAAATCCATATTTCTCGCGCCGCACGCCAAGCTGTTTATCCGGCCAAGTTCCAACTTGTCGCCGCCATGAA
CCCCTGCCCTTGCGGCTATCTTGGTCATCCATCCAAACCTTGCCGCTGTACGCCTGAAAGTGTTGCCCGCTACCGCAACA
AAATTTCAGGGCCATTACTCGACCGTATTGATTTAACCATCGAAGTACCCAGCCTTTCCGCTGCCGAGTTGATACAACAA
GAAGCAGGCGAATCCAGTGCCACCGTATTGGAACGCGTTACCGCCGCACGCAAAATCCAATACAACAGACAAGGCAAAGT
CAATGCAGAACTGAGTGTCGGCGAGCTCGATGGCAAAGCCCGCATCCAAAAAGAAGCGCAAGAAGCCTTGGGAACCATGC
TCGAAAAACTGTCCCTTTCCGCACGAAGTTTCCACCGCATCATGCGCGTTGCCCGTACGTTGGCCGATTTGGCAGGGGAT
GAAGAAGTCAGCAAAACCCATGTGATGAAAGCCATCAGCTTCCGTCGCGCCCTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.789

100

0.532
  comM Vibrio campbellii strain DS40M4

52

100

0.522
  comM Haemophilus influenzae Rd KW20

49.499

100

0.496
  comM Glaesserella parasuis strain SC1401

49.004

100

0.494
  comM Legionella pneumophila str. Paris

46.875

100

0.482
  comM Legionella pneumophila strain ERS1305867

46.875

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.96

100

0.446