Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   KCG56_RS00300 Genome accession   NZ_CP073116
Coordinates   76635..77276 (-) Length   213 a.a.
NCBI ID   WP_254321537.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0073     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 71635..82276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS00285 (KCG56_00310) comE 74732..75019 (+) 288 WP_254321153.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG56_RS00290 (KCG56_00315) comP 75285..75698 (+) 414 WP_254322190.1 type IV pilin protein Machinery gene
  KCG56_RS00295 (KCG56_00320) - 75767..76590 (-) 824 Protein_52 undecaprenyl-diphosphate phosphatase -
  KCG56_RS00300 (KCG56_00325) dsbA1 76635..77276 (-) 642 WP_254321537.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KCG56_RS00305 (KCG56_00330) - 77288..78418 (-) 1131 WP_254321538.1 SPOR domain-containing protein -
  KCG56_RS00310 (KCG56_00335) comM 78573..80069 (-) 1497 WP_254321539.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KCG56_RS00315 (KCG56_00340) - 80083..80403 (-) 321 WP_254321540.1 accessory factor UbiK family protein -
  KCG56_RS00320 (KCG56_00345) - 80528..81592 (-) 1065 WP_254321541.1 DUF1176 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23816.61 Da        Isoelectric Point: 9.8828

>NTDB_id=558061 KCG56_RS00300 WP_254321537.1 76635..77276(-) (dsbA1) [Neisseria subflava strain TT0073]
MKQRIKQTIAALSLSLLSLSVQAATEGMDYTVLSHPIPQQQAGKIEVLEFFGYFCVHCYHFDPVLLQHSKTFSKDVSLRT
EHVVWMPEMLGLAKVAAAVNLSGLKYQANPVIFKAVYEQKINLADTNVFRSWVGKQTGFDSKKLLQAYNSPAAASAAAKM
QQLTETYRIENTPTVIVGGKYKVNFNSTDWKAGMKTIDELIVKVRREQSSKPL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=558061 KCG56_RS00300 WP_254321537.1 76635..77276(-) (dsbA1) [Neisseria subflava strain TT0073]
ATGAAGCAGCGTATAAAACAAACCATTGCCGCACTCAGCCTGAGCCTGCTCAGCCTGAGTGTGCAGGCTGCTACCGAAGG
TATGGACTACACTGTTCTTAGTCATCCTATCCCGCAGCAACAAGCCGGAAAAATTGAAGTACTTGAGTTTTTCGGCTACT
TCTGCGTTCATTGTTACCATTTCGATCCGGTTTTGTTGCAACACAGCAAAACCTTCTCTAAAGATGTTTCCTTACGGACA
GAGCACGTCGTTTGGATGCCTGAAATGTTGGGTTTGGCCAAGGTGGCCGCAGCCGTTAATCTTTCAGGTTTGAAATATCA
AGCCAATCCAGTCATCTTCAAAGCAGTTTACGAACAAAAAATCAACCTGGCCGATACCAATGTATTCCGATCATGGGTAG
GTAAACAGACAGGTTTTGACAGTAAAAAACTGCTTCAAGCCTACAACAGTCCTGCTGCCGCATCGGCTGCTGCAAAAATG
CAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTGTCATCGTCGGTGGTAAATACAAAGTCAATTTCAACAG
TACCGACTGGAAAGCCGGTATGAAAACCATAGACGAGCTCATCGTCAAAGTCCGCCGCGAACAATCCTCAAAACCACTTT
AA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(44-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

59.358

87.793

0.521
  dsbA2 Neisseria meningitidis MC58

58.47

85.915

0.502