Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   KCG56_RS00290 Genome accession   NZ_CP073116
Coordinates   75285..75698 (+) Length   137 a.a.
NCBI ID   WP_254322190.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0073     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 70285..80698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS00285 (KCG56_00310) comE 74732..75019 (+) 288 WP_254321153.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG56_RS00290 (KCG56_00315) comP 75285..75698 (+) 414 WP_254322190.1 type IV pilin protein Machinery gene
  KCG56_RS00295 (KCG56_00320) - 75767..76590 (-) 824 Protein_52 undecaprenyl-diphosphate phosphatase -
  KCG56_RS00300 (KCG56_00325) dsbA1 76635..77276 (-) 642 WP_254321537.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KCG56_RS00305 (KCG56_00330) - 77288..78418 (-) 1131 WP_254321538.1 SPOR domain-containing protein -
  KCG56_RS00310 (KCG56_00335) comM 78573..80069 (-) 1497 WP_254321539.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KCG56_RS00315 (KCG56_00340) - 80083..80403 (-) 321 WP_254321540.1 accessory factor UbiK family protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14979.44 Da        Isoelectric Point: 10.1122

>NTDB_id=558060 KCG56_RS00290 WP_254322190.1 75285..75698(+) (comP) [Neisseria subflava strain TT0073]
MLLVSILATAAFTAYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTSTKWPELPVKEAGGFCIRMSGQAKGILEG
KFTLKAVALDRKAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECRPFTG

Nucleotide


Download         Length: 414 bp        

>NTDB_id=558060 KCG56_RS00290 WP_254322190.1 75285..75698(+) (comP) [Neisseria subflava strain TT0073]
ATGCTGTTAGTTTCGATATTGGCGACGGCGGCATTTACGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGGC
TCATGCAGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATACGAAAAAGGGCAGCTTTAAGCTGACGTCGACGA
AGTGGCCGGAGTTGCCGGTCAAGGAGGCGGGCGGTTTCTGTATTAGGATGAGCGGCCAGGCTAAGGGGATCTTGGAGGGG
AAGTTTACTTTGAAGGCGGTGGCGTTGGACAGGAAGGCGGAACCGAGGGTATTGCGCTTGAATGAGTCGCTGACGGCGGT
GGTGTGCGGGAAGATGAAGGGGAAGGGAAGCTGTACGGACGGAGAGGAGATATTTAGGGGCAATGATGCGGAGTGTCGGC
CTTTTACGGGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(14-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

97.81

100

0.978
  comP Neisseria meningitidis 8013

50.37

98.54

0.496
  comP Neisseria gonorrhoeae MS11

50.376

97.08

0.489