Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NCGM1900_RS30290 Genome accession   NZ_AP014622
Coordinates   6492048..6493370 (+) Length   440 a.a.
NCBI ID   WP_023098906.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NCGM1900     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 6487048..6498370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCGM1900_RS34395 - 6487244..6488404 (-) 1161 WP_077575469.1 TniQ family protein -
  NCGM1900_RS30275 - 6488423..6489328 (-) 906 WP_023098904.1 TniB family NTP-binding protein -
  NCGM1900_RS30280 (NCGM1900_6130) - 6489335..6491269 (-) 1935 WP_023098905.1 Mu transposase C-terminal domain-containing protein -
  NCGM1900_RS30285 - 6491266..6492054 (-) 789 WP_049878009.1 heteromeric transposase endonuclease subunit TnsA -
  NCGM1900_RS30290 (NCGM1900_6131) comM 6492048..6493370 (+) 1323 WP_023098906.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NCGM1900_RS30295 (NCGM1900_6132) betT 6493495..6495480 (+) 1986 WP_003096496.1 choline BCCT transporter BetT -
  NCGM1900_RS30300 (NCGM1900_6133) pchP 6495523..6496572 (-) 1050 WP_003096497.1 phosphorylcholine phosphatase -
  NCGM1900_RS30305 (NCGM1900_6134) - 6496723..6497640 (-) 918 WP_014604122.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 47310.35 Da        Isoelectric Point: 7.7787

>NTDB_id=55797 NCGM1900_RS30290 WP_023098906.1 6492048..6493370(+) (comM) [Pseudomonas aeruginosa strain NCGM1900]
MSFANTILVFLIYHNISDKDGGRFDLAIALGILAASGQLPGTTLDGLECLGELALSGAIRPVRGVLPAALAARDARRVLV
VPKENAEEASLASGLTVFAVDHLLEIAGHLSGQAPLLPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLS
GPPGTGKTLLASRLPGLLPALDEDEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGV
LFLDELPEFERKVLEVLREPLESGEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPL
LDRIDLHVSVLRESTSLQPGHGETATAEISERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELS
LRALHRILKVARTLADLERIDAIERRHLAEALQYRATTST

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=55797 NCGM1900_RS30290 WP_023098906.1 6492048..6493370(+) (comM) [Pseudomonas aeruginosa strain NCGM1900]
TTGTCATTCGCAAATACCATACTTGTCTTTCTCATATATCATAATATCTCAGACAAGGACGGCGGTCGCTTCGACCTGGC
CATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCACCCTCGACGGCCTGGAGTGCCTTGGCGAACTGG
CCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGCGCGTTCTGGTG
GTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTGCTGGAGATCGC
CGGACACCTCTCCGGCCAGGCCCCGCTGCTGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCCTTATCCAGACC
TGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACCTGTTGCTCAGC
GGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAGGACGAGGCCCT
GGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCGCCAGCCGCACC
ACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGCACCAGGGCGTG
CTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGCGGCGAGATCGT
CATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTGTCCCTGTGGCT
ACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGTCCGGACCGCTG
CTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAAACCGCTACCGC
CGAGATCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCATCTCGACCTCC
AGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCCTGGAACTTTCC
TTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATCGAACGCCGGCA
CCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-85)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(345-435)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(133-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.037

97.273

0.516
  comM Vibrio cholerae O1 biovar El Tor strain E7946

53.682

95.682

0.514
  comM Vibrio cholerae strain A1552

53.682

95.682

0.514
  comM Vibrio campbellii strain DS40M4

53.444

95.682

0.511
  comM Glaesserella parasuis strain SC1401

52.225

97.045

0.507
  comM Acinetobacter baylyi ADP1

51.3

96.136

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.005

98.636

0.464
  comM Legionella pneumophila str. Paris

47.442

97.727

0.464
  comM Legionella pneumophila strain ERS1305867

47.442

97.727

0.464
  comM Helicobacter pylori 26695

37.529

99.318

0.373

Multiple sequence alignment