NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	INT76_RS03010	Genome accession	NZ_CP073084
Coordinates	612997..613587 (-)	Length	196 a.a.
NCBI ID	WP_212572035.1	Uniprot ID	-
Organism	Streptococcus oriscaviae strain HKU75
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 607997..618587

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INT76_RS02985 (INT76_02985)	-	608529..609293 (-)	765	WP_212572026.1	ABC transporter ATP-binding protein	-
INT76_RS02990 (INT76_02990)	-	609293..610243 (-)	951	WP_212572028.1	branched-chain amino acid ABC transporter permease	-
INT76_RS02995 (INT76_02995)	-	610246..611133 (-)	888	WP_212572030.1	branched-chain amino acid ABC transporter permease	-
INT76_RS03000 (INT76_03000)	-	611338..612510 (-)	1173	WP_212572031.1	ABC transporter substrate-binding protein	-
INT76_RS03005 (INT76_03005)	-	612599..612871 (-)	273	WP_212572033.1	YlbG family protein	-
INT76_RS03010 (INT76_03010)	clpP	612997..613587 (-)	591	WP_212572035.1	ATP-dependent Clp protease proteolytic subunit	Regulator
INT76_RS03015 (INT76_03015)	-	613667..614323 (-)	657	WP_212572036.1	ATP-binding cassette domain-containing protein	-
INT76_RS03020 (INT76_03020)	-	614316..615188 (-)	873	WP_212572038.1	hypothetical protein	-
INT76_RS03025 (INT76_03025)	upp	615743..616372 (-)	630	WP_212572040.1	uracil phosphoribosyltransferase	-
INT76_RS03030 (INT76_03030)	-	616454..618064 (-)	1611	WP_212572042.1	alpha-glucosidase	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21497.61 Da Isoelectric Point: 4.8432

                                >NTDB_id=557827 INT76_RS03010 WP_212572035.1 612997..613587(-) (clpP) [Streptococcus oriscaviae strain HKU75]

MIPVVIEQTSRGERSYDIYSRLLKDRIVMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKSDVQTIVMGTAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEQILADNSGK

TVEQIHKDAERDYWMTAEETLAYGFIDKVMENTNLK

Nucleotide

Download Length: 591 bp

                                >NTDB_id=557827 INT76_RS03010 WP_212572035.1 612997..613587(-) (clpP) [Streptococcus oriscaviae strain HKU75]

ATGATTCCAGTAGTTATTGAACAAACGAGCCGCGGTGAACGTTCCTACGATATTTACTCCCGCTTATTGAAAGATCGGAT

TGTCATGCTGACAGGGCCTGTTGAAGACAATATGGCCAACTCTATCATTGCCCAGTTGCTCTTTCTTGATGCCCAAGACC

CAACCAAGGATATTTACCTCTATGTAAATACACCAGGAGGTTCAGTATCTGCAGGTCTTGCTATCGTTGATACCATGAAC

TTTATCAAGTCTGATGTGCAGACCATTGTTATGGGAACAGCAGCCAGCATGGGAACGGTGATTGCTTCAAGCGGTGCCAA

AGGCAAACGCTTTATGTTGCCAAATGCTGAGTACATGATTCACCAGCCAATGGGTGGCACAGGTGGTGGTACCCAACAGA

CAGACATGGCCATTGCAGCAGAGCACCTGCTTAAGACTCGTAACAAGTTGGAGCAGATTTTGGCGGACAACTCAGGTAAG

ACCGTTGAGCAGATTCATAAGGATGCAGAACGTGATTACTGGATGACTGCTGAAGAAACGCTAGCCTATGGCTTTATTGA

TAAGGTAATGGAAAACACCAACCTGAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pyogenes JRS4	90.816	100	0.908
clpP	Streptococcus pyogenes MGAS315	90.816	100	0.908
clpP	Streptococcus mutans UA159	89.286	100	0.893
clpP	Streptococcus thermophilus LMD-9	88.776	100	0.888
clpP	Streptococcus thermophilus LMG 18311	88.776	100	0.888
clpP	Streptococcus pneumoniae TIGR4	88.205	99.49	0.878
clpP	Streptococcus pneumoniae Rx1	88.205	99.49	0.878
clpP	Streptococcus pneumoniae D39	88.205	99.49	0.878
clpP	Streptococcus pneumoniae R6	88.205	99.49	0.878
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	85.204	100	0.852
clpP	Lactococcus lactis subsp. cremoris KW2	84.694	100	0.847
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.067	98.469	0.582
clpP	Bacillus subtilis subsp. subtilis str. 168	57.143	100	0.571

Detailed information NTG0557827