Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   J9870_RS02025 Genome accession   NZ_CP072913
Coordinates   458843..460915 (+) Length   690 a.a.
NCBI ID   WP_210642476.1    Uniprot ID   -
Organism   Pseudomonas sp. Tri1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453843..465915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9870_RS02005 comM 456055..457119 (+) 1065 WP_210642472.1 pilus assembly protein PilM Machinery gene
  J9870_RS02010 - 457119..457685 (+) 567 WP_210642473.1 PilN domain-containing protein -
  J9870_RS02015 pilO 457682..458305 (+) 624 WP_210642474.1 type 4a pilus biogenesis protein PilO -
  J9870_RS02020 - 458302..458829 (+) 528 WP_210642475.1 pilus assembly protein PilP -
  J9870_RS02025 pilQ 458843..460915 (+) 2073 WP_210642476.1 type IV pilus secretin PilQ Machinery gene
  J9870_RS02030 aroK 460920..461438 (+) 519 WP_024779904.1 shikimate kinase AroK -
  J9870_RS02035 aroB 461587..462687 (+) 1101 WP_210642477.1 3-dehydroquinate synthase -
  J9870_RS02040 - 462698..464275 (+) 1578 WP_210642478.1 AAA family ATPase -

Sequence

Protein


Download         Length: 690 a.a.        Molecular weight: 74566.72 Da        Isoelectric Point: 5.2919

>NTDB_id=556805 J9870_RS02025 WP_210642476.1 458843..460915(+) (pilQ) [Pseudomonas sp. Tri1]
MNRIFSALGISLWIALLSPMVHAANLKTLDVAALPGDRIELKLAFDGPPPTPRGYTTDQPARIALDLPGVSNQLASKRRD
LGGGNARSATVVEAGDRTRLIIGLTQLAPYDTRIEGNNLFVVVGKGIAPKATTQAARPAVASAAPARASAPVGKAIRGVD
FQRGTQGEGNVVIDLSDPSIAPDIQEREGKIILNFARTQLPEPLRVRLDVKDFATPVQFVNAIAGGDRATISIEPSGTFD
YSTYQTDNKLTVSVRPMTVEDLQKRNSDRAAYSGEKLSLNFQDIEVRSVLQLIADFTNLNLVASDTVQGGITLRLQNVPW
DQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIADLAPLRRELLQVNYAKAADIAKLFQSVTSAEAKAD
ERGTITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWSSSGVTTGD
STTIGTPGSTSTNQPFVDLGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQE
ASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVNDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQ
SKVVDKVPFLGDVPYLGRLFRRDVVSETKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2073 bp        

>NTDB_id=556805 J9870_RS02025 WP_210642476.1 458843..460915(+) (pilQ) [Pseudomonas sp. Tri1]
ATGAACAGGATTTTTTCTGCCCTCGGTATTTCGCTATGGATAGCGCTGTTGTCGCCGATGGTTCATGCGGCCAACCTGAA
GACGCTGGATGTGGCGGCGTTGCCGGGTGACCGCATCGAGTTGAAACTCGCCTTCGATGGGCCGCCGCCGACGCCTCGGG
GCTACACCACCGATCAGCCGGCCCGGATCGCGCTGGACCTGCCCGGCGTGAGCAATCAACTGGCCAGTAAGCGCCGTGAC
CTGGGCGGTGGCAACGCACGCAGTGCCACCGTGGTCGAGGCGGGCGACCGTACGCGGCTGATCATCGGCCTTACCCAACT
GGCGCCGTATGACACCCGGATCGAAGGCAACAACCTGTTCGTGGTGGTTGGCAAAGGCATCGCGCCCAAGGCCACGACCC
AGGCTGCGCGTCCGGCGGTTGCCAGTGCCGCGCCTGCCAGGGCCAGCGCGCCGGTGGGCAAGGCTATCCGTGGCGTGGAT
TTCCAGCGCGGAACCCAGGGTGAAGGCAATGTGGTGATCGATCTGTCGGACCCTTCCATCGCTCCGGACATCCAGGAGCG
TGAAGGCAAGATCATCCTCAATTTCGCCAGGACCCAGTTGCCCGAGCCGCTGCGGGTGCGCCTGGACGTCAAGGACTTCG
CCACCCCGGTGCAGTTCGTCAATGCCATTGCCGGCGGCGACCGGGCGACCATCAGCATCGAACCCAGCGGCACCTTCGAT
TATTCCACCTACCAGACCGACAACAAGCTGACCGTCAGCGTCCGGCCGATGACGGTAGAGGACCTGCAAAAACGCAATTC
CGATCGCGCCGCCTACAGCGGTGAGAAACTCTCGCTGAACTTCCAGGACATCGAAGTGCGTTCGGTCCTGCAACTGATCG
CCGATTTCACCAATTTGAACCTGGTGGCAAGTGACACGGTGCAGGGCGGCATTACCCTGCGGCTACAGAACGTGCCTTGG
GATCAGGCGCTGGACTTGGTGCTCAAGACCAAAGGGCTGGACAAGCGCAAGGTCGGCAACGTGCTGCTGGTGGCCCCGGC
CGATGAAATCGCGGCGCGCGAGCGCCAGGAGTTGGAGTCCCAGAAGCAGATTGCCGACCTGGCGCCGCTGCGGCGTGAGT
TGCTGCAGGTCAATTACGCGAAGGCCGCGGACATCGCCAAGCTGTTCCAGTCGGTGACCAGTGCCGAAGCGAAAGCCGAT
GAGCGCGGCACGATCACGGTGGATGAGCGTACCAACAACATCATTGCCTACCAGACCCAGGACCGCCTCGACGAGCTACG
CCGGATCGTGGCGCAGCTGGATATTCCGGTGCGCCAGGTGATGATCGAGGCGCGGATCGTCGAGGCCAACGTCGATTACG
ACAAAAGCCTGGGTGTGCGTTGGGGCGGTTCGATCCAGAACAAGGGCAACTGGAGTTCCTCCGGGGTCACCACCGGCGAC
TCCACCACCATTGGCACGCCGGGCAGCACCAGCACCAACCAGCCATTTGTCGATCTGGGCGCGTCGGGTAACACCTCTGG
AATCGGCATTGCGTTCATTACCGACAACGTGCTGCTGGATCTGGAGCTGACGGCCATGGAGAAAACCGGCAACGGCGAAA
TCGTCTCCCAGCCCAAGGTGGTGACGTCCGACAAGGAGACGGCCAAAATCCTCAAGGGCACGGAGATTCCTTATCAGGAA
GCCAGCTCCAGCGGTGCTACCTCGGTGTCGTTCAAGGAGGCCTCGCTGTCGCTGGAGGTGACCCCGCAGATCACCCCGGA
CAACCGCATCATCATGGAGGTCAAGGTCACCAAGGATGAGCCGGACTACCTGAACAAGGTGAATGATGTGCCACCGATCA
AGAAAAACGAGGTCAACGCCAAGGTCCTGGTCAATGATGGCGAGACCATTGTGATTGGCGGGGTTTTCTCAAATACTCAG
AGCAAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGTTTCGGA
GACAAAATCCGAGCTGCTGGTGTTCCTCACTCCGCGTATCATGAACAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(374-439)

AMIN domain (AMIN)

(37-121)

Secretin and TonB N terminus short domain (STN)

(300-346)

Bacterial type II and III secretion system protein (Secretin)

(525-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.905

100

0.757
  comQ Acinetobacter baylyi ADP1

42.029

100

0.42
  pilQ Acinetobacter baumannii strain A118

38.627

100

0.416
  pilQ Acinetobacter baumannii D1279779

38.627

100

0.416
  pilQ Legionella pneumophila strain Lp02

37.834

97.681

0.37
  pilQ Legionella pneumophila strain ERS1305867

37.834

97.681

0.37