Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J9870_RS02005 Genome accession   NZ_CP072913
Coordinates   456055..457119 (+) Length   354 a.a.
NCBI ID   WP_210642472.1    Uniprot ID   -
Organism   Pseudomonas sp. Tri1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 451055..462119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9870_RS01995 - 451860..453128 (+) 1269 WP_030140993.1 malic enzyme-like NAD(P)-binding protein -
  J9870_RS02000 - 453402..455846 (-) 2445 WP_210645072.1 penicillin-binding protein 1A -
  J9870_RS02005 comM 456055..457119 (+) 1065 WP_210642472.1 pilus assembly protein PilM Machinery gene
  J9870_RS02010 - 457119..457685 (+) 567 WP_210642473.1 PilN domain-containing protein -
  J9870_RS02015 pilO 457682..458305 (+) 624 WP_210642474.1 type 4a pilus biogenesis protein PilO -
  J9870_RS02020 - 458302..458829 (+) 528 WP_210642475.1 pilus assembly protein PilP -
  J9870_RS02025 pilQ 458843..460915 (+) 2073 WP_210642476.1 type IV pilus secretin PilQ Machinery gene
  J9870_RS02030 aroK 460920..461438 (+) 519 WP_024779904.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38100.58 Da        Isoelectric Point: 4.9070

>NTDB_id=556804 J9870_RS02005 WP_210642472.1 456055..457119(+) (comM) [Pseudomonas sp. Tri1]
MLRLFNKKAHTLLGIDISSTSVKLLELSRQGDRYRVESYAVEPLPANAVVEKNIAELEGVGQALSRVLAKAKTPSRNVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKIEADQYIPYPLDEVAIDFEVLGPSPRSTERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERAFGLLATQLAASQERLTVAVIDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTA
EQAGLAKKQGGLPDDYLSEVLQPFREALVQQVSRSLQFFFASGQYSAVDHILLAGGSASVAGLDRLIEQRLGTPTQVANP
FTNMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=556804 J9870_RS02005 WP_210642472.1 456055..457119(+) (comM) [Pseudomonas sp. Tri1]
GTGCTACGACTCTTCAATAAAAAAGCCCATACGCTTCTGGGGATAGACATCAGCTCCACGTCGGTGAAGCTGCTTGAGTT
GAGCCGCCAGGGCGACCGGTACCGCGTCGAGTCTTACGCGGTCGAACCATTGCCGGCCAACGCCGTGGTTGAAAAGAATA
TCGCCGAGCTCGAAGGGGTGGGGCAGGCATTGTCTCGGGTGCTGGCCAAGGCCAAGACACCCTCGCGCAACGTGGCCGTC
GCGGTGGCCGGTTCAGCGGTAATCACCAAGACCATCGAGATGGACGCCGGGTTGTCCGACGATGACATGGAAAACCAGCT
CAAGATCGAGGCCGACCAGTACATACCTTATCCGCTGGATGAGGTGGCCATCGATTTCGAAGTCCTCGGCCCGTCACCGC
GTAGCACCGAGCGAGTCGAGGTGCTGCTGGCGGCCTGTCGCAAGGAAAACGTCGAGGTCCGCGAGGCTGCGCTGGCGCTG
GCCGGGCTGACGGCCCGGGTGGTCGATGTGGAAGCCTATGCGCTGGAGCGCGCCTTTGGCCTGCTCGCCACGCAGCTGGC
CGCGTCCCAGGAACGGCTGACGGTGGCGGTCATCGACATCGGCGCCACCATGACCACCCTCAGCGTGCTGCACAACGGGC
GGATCATCTATACCCGCGAGCAATTGTTCGGTGGACGCCAGCTCACCGAGGAAATCCAGCGTCGCTATGGCCTGACGGCC
GAACAGGCGGGCCTGGCAAAGAAGCAGGGTGGCCTGCCGGACGATTACCTCAGTGAGGTGCTGCAACCTTTTCGCGAGGC
CTTGGTGCAACAGGTTTCGCGGTCCTTGCAGTTTTTCTTCGCTTCGGGCCAGTACAGCGCGGTTGACCATATTTTGTTGG
CCGGGGGCTCGGCGTCGGTCGCAGGCCTGGATCGGTTGATCGAACAACGCCTGGGCACACCGACCCAGGTGGCCAACCCG
TTTACCAACATGGCCCTGAGCAGCAAGGTGAATGCGGGCGCCTTGGCCAGTGATGCGCCGGCGCTGATGATTGCCTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.497

100

0.565
  pilM Acinetobacter baumannii D1279779

56.215

100

0.562
  comM Acinetobacter baylyi ADP1

54.802

100

0.548
  pilM Legionella pneumophila strain ERS1305867

48.023

100

0.48