Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   J8Y16_RS13520 Genome accession   NZ_CP072766
Coordinates   2618168..2618749 (-) Length   193 a.a.
NCBI ID   WP_000991625.1    Uniprot ID   A0A2A8KY00
Organism   Bacillus cereus strain BC06     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2613168..2623749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y16_RS13490 (J8Y16_13490) - 2613180..2614016 (-) 837 WP_071735920.1 PP2C family serine/threonine-protein phosphatase -
  J8Y16_RS13495 (J8Y16_13495) - 2614000..2614491 (-) 492 WP_002021523.1 HIT family protein -
  J8Y16_RS13500 (J8Y16_13500) - 2614594..2614761 (-) 168 WP_002053336.1 hypothetical protein -
  J8Y16_RS13505 (J8Y16_13505) - 2615059..2615895 (-) 837 WP_001084757.1 proline/glycine betaine ABC transporter permease -
  J8Y16_RS13510 (J8Y16_13510) - 2615888..2617093 (-) 1206 WP_000370609.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  J8Y16_RS13515 (J8Y16_13515) - 2617265..2618122 (+) 858 WP_001227634.1 glycine betaine ABC transporter substrate-binding protein -
  J8Y16_RS13520 (J8Y16_13520) clpP 2618168..2618749 (-) 582 WP_000991625.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  J8Y16_RS13525 (J8Y16_13525) - 2618771..2619457 (-) 687 WP_212803934.1 RNA polymerase subunit sigma-70 -
  J8Y16_RS13530 (J8Y16_13530) - 2619600..2619920 (+) 321 WP_212803935.1 2Fe-2S iron-sulfur cluster-binding protein -
  J8Y16_RS13535 (J8Y16_13535) rpiA 2619925..2620590 (+) 666 WP_087931905.1 ribose 5-phosphate isomerase A -
  J8Y16_RS13540 (J8Y16_13540) - 2620695..2621129 (+) 435 WP_000555712.1 GNAT family N-acetyltransferase -
  J8Y16_RS13545 (J8Y16_13545) - 2621260..2622627 (-) 1368 WP_212803936.1 lytic polysaccharide monooxygenase -
  J8Y16_RS13550 (J8Y16_13550) - 2623065..2623583 (-) 519 WP_000720568.1 DNA topology modulation protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21178.42 Da        Isoelectric Point: 5.0776

>NTDB_id=555408 J8Y16_RS13520 WP_000991625.1 2618168..2618749(-) (clpP) [Bacillus cereus strain BC06]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=555408 J8Y16_RS13520 WP_000991625.1 2618168..2618749(-) (clpP) [Bacillus cereus strain BC06]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATACTCAAGGTTATTAAAAGA
CCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCTATATTAGATACG
ATGAATTTAATTAAACCAGACGTGCAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCGCAAGGGCAAGCGA
CGGAAATCGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATCGTAGA
TGATGTTGTTACGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A8KY00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus thermophilus LMD-9

54.688

99.482

0.544
  clpP Streptococcus pneumoniae Rx1

54.688

99.482

0.544
  clpP Streptococcus thermophilus LMG 18311

54.688

99.482

0.544
  clpP Streptococcus pneumoniae D39

54.688

99.482

0.544
  clpP Streptococcus pneumoniae R6

54.688

99.482

0.544
  clpP Streptococcus pneumoniae TIGR4

54.688

99.482

0.544
  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544
  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544
  clpP Streptococcus mutans UA159

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487