Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   J5X98_RS00400 Genome accession   NZ_CP072600
Coordinates   93969..94334 (+) Length   121 a.a.
NCBI ID   WP_223048254.1    Uniprot ID   -
Organism   Leptothermofonsia sichuanensis E412     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 88969..99334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X98_RS00380 (J5X98_00380) - 89170..89445 (+) 276 WP_225938279.1 ferredoxin-thioredoxin reductase variable chain -
  J5X98_RS00385 (J5X98_00385) - 89442..89666 (-) 225 WP_223048251.1 hypothetical protein -
  J5X98_RS00390 (J5X98_00390) hmpF 89709..91466 (-) 1758 WP_223048252.1 pilus motility taxis protein HmpF -
  J5X98_RS00395 (J5X98_00395) - 92540..93811 (+) 1272 WP_223048253.1 response regulator -
  J5X98_RS00400 (J5X98_00400) pilH 93969..94334 (+) 366 WP_223048254.1 response regulator transcription factor Machinery gene
  J5X98_RS00405 (J5X98_00405) - 94346..94876 (+) 531 WP_223048255.1 chemotaxis protein CheW -
  J5X98_RS00410 (J5X98_00410) - 94893..95048 (+) 156 WP_223048256.1 hypothetical protein -
  J5X98_RS00415 (J5X98_00415) pilJ 95032..97842 (+) 2811 WP_223048257.1 HAMP domain-containing methyl-accepting chemotaxis protein Machinery gene

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13350.41 Da        Isoelectric Point: 4.6951

>NTDB_id=554496 J5X98_RS00400 WP_223048254.1 93969..94334(+) (pilH) [Leptothermofonsia sichuanensis E412]
MSTVLVVEDSVTQREMISDLLRGSGLSVTEASDGVEALEQIQGKCPDLVVLDIVMPRMNGYEVCRRLKADPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=554496 J5X98_RS00400 WP_223048254.1 93969..94334(+) (pilH) [Leptothermofonsia sichuanensis E412]
ATGAGTACAGTTCTAGTCGTAGAGGATAGCGTCACTCAGCGGGAGATGATCTCCGACCTGTTGAGGGGAAGCGGTTTGAG
CGTGACTGAGGCGAGCGATGGAGTAGAAGCACTGGAACAAATTCAAGGCAAGTGCCCTGATTTAGTGGTTTTGGACATTG
TAATGCCCCGCATGAATGGGTACGAGGTCTGTCGTCGGCTAAAGGCGGATCCTAAAACTCAAAATGTCCCGGTCGTAATG
TGTTCATCCAAGGGCGAAGAATTTGATCGTTACTGGGGAATGAAACAGGGGGCGGATGCTTACATTGCGAAGCCATTTCA
ACCCACTGAACTCGTGGGTACGGTTAAACAACTATTGCGAGGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  pilG Acinetobacter baumannii strain A118

42.105

94.215

0.397
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  chpA Acinetobacter baumannii strain A118

40.517

95.868

0.388
  pilL-C Synechocystis sp. PCC 6803

38.333

99.174

0.38
  vicR Streptococcus mutans UA159

37.5

99.174

0.372