Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   J7649_RS08915 Genome accession   NZ_CP072549
Coordinates   1873574..1875739 (-) Length   721 a.a.
NCBI ID   WP_219307481.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain H7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1868574..1880739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7649_RS08900 (J7649_08900) - 1871004..1871882 (-) 879 WP_005108518.1 hypothetical protein -
  J7649_RS08905 (J7649_08905) aroB 1871893..1872972 (-) 1080 WP_219307479.1 3-dehydroquinate synthase -
  J7649_RS08910 (J7649_08910) aroK 1873001..1873537 (-) 537 WP_005094320.1 shikimate kinase AroK -
  J7649_RS08915 (J7649_08915) pilQ 1873574..1875739 (-) 2166 WP_219307481.1 type IV pilus secretin PilQ Machinery gene
  J7649_RS08920 (J7649_08920) pilP 1875757..1876284 (-) 528 WP_005248368.1 pilus assembly protein PilP Machinery gene
  J7649_RS08925 (J7649_08925) pilO 1876284..1876994 (-) 711 WP_005248371.1 type 4a pilus biogenesis protein PilO Machinery gene
  J7649_RS08930 (J7649_08930) comN 1876991..1877629 (-) 639 WP_180180631.1 PilN domain-containing protein Machinery gene
  J7649_RS08935 (J7649_08935) pilM 1877629..1878687 (-) 1059 WP_180037253.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78450.84 Da        Isoelectric Point: 5.0774

>NTDB_id=554122 J7649_RS08915 WP_219307481.1 1873574..1875739(-) (pilQ) [Acinetobacter lwoffii strain H7]
MNKSIKEFIFGDVNTMNRVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQLPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFDKAQQNLKQSKIPVATREASSVEVTSDAQRARLTVNLTDAGAFTTRVEGNTFILKINSATPVAIAQPVQQQSAQGIS
NIGFQRGAQGEGQVVIDLLGNNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVTDFATPVSSVDAVNQNGSGVITIQSAE
SYEYMAYQTDNKLTISLKRPEAKSPLRPKTVAYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVP
WDQALDIVLKTKNLDKRRNGNVIWIAPVTELIKAEEEEAKAIKQSVALAPIQTEYMQLSYAKAADIEKLITQNKGASSSG
SSSNTTNNDERESLLSSRGSVSIDARTNTIIVNDTQLFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGIL
SQGITNNDSLLVGGSDTTLWDLRDPQESDLGGYTYEIQRPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADG
YGEVISTPKVLTADKQKATVASGSQIPYQSAEGGGANAVSTTEFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTPT
GQLTINKNQINTNVLVDNGETVVLGGIFEQETRNAQTKVPFLGDIPYVGRLFRKDLKSDNKRELLIFVTPRIVNDSVSRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=554122 J7649_RS08915 WP_219307481.1 1873574..1875739(-) (pilQ) [Acinetobacter lwoffii strain H7]
ATGAATAAGAGTATTAAAGAATTTATTTTTGGGGATGTTAATACAATGAATCGTGTGTTTCGTCAGTTTTCCATGGGTGC
TGTTGCGATTGCAGTGATGCAAGCGGCCAGTGCGCAGGTTTCAATGACCAATGTAGTACCCATGCAGCTTCCTGGACAAG
GAACTGAGATTCGGGTGATGTTCAATGGTTTGCCACCACAACCACAAGCCTACCAATTAGAATCACCGTCACGTTTGATT
CTGGACTTTGACAAGGCCCAACAGAATTTAAAACAAAGCAAAATTCCGGTCGCAACGCGTGAAGCCAGTTCAGTGGAGGT
CACTTCGGATGCACAGCGTGCCCGTTTGACGGTTAATCTGACAGATGCAGGTGCCTTTACCACTCGAGTAGAAGGCAATA
CTTTTATTCTTAAAATTAATTCGGCAACTCCTGTAGCCATAGCTCAACCTGTGCAGCAACAGTCGGCTCAGGGTATTAGC
AATATTGGTTTCCAGCGCGGTGCGCAAGGTGAAGGCCAGGTCGTTATTGATCTATTAGGGAATAATACTCCTGTTGATGT
ACAGCAGCAGGGTACCAAGGTTATTGTGCGCACTTTAGGTTCCAAGATTCCGGCTCATTTGACCCGCCGTCTTAATGTGA
CTGATTTTGCGACTCCGGTATCAAGTGTGGATGCTGTGAATCAAAATGGTTCAGGAGTCATTACGATTCAGTCTGCGGAA
AGTTATGAATATATGGCTTATCAGACTGATAACAAGCTGACCATCAGCTTGAAACGTCCGGAAGCTAAGAGCCCATTACG
TCCTAAAACTGTGGCTTATACCGGCAAGAAAATTTCCTTAGATTTCCAGGATATCGAAGTCCGTCGTGTTTTACAGCTTT
TAGCTGACTTCACTGATATTAATATGGTGGCCGCAGACAGTGTACAAGGCAATATTACTTTGCGCTTGAAAGAGGTACCT
TGGGATCAGGCGCTGGATATTGTGCTGAAAACCAAAAATCTGGATAAACGGCGCAATGGCAATGTGATCTGGATCGCACC
AGTTACAGAGCTGATAAAGGCTGAAGAGGAAGAAGCTAAGGCGATTAAGCAGAGTGTTGCACTTGCGCCTATCCAAACGG
AATATATGCAGCTCAGTTATGCCAAAGCCGCTGATATTGAGAAACTGATTACGCAGAATAAAGGCGCATCTAGTTCAGGT
AGTTCGAGTAACACTACAAATAATGATGAGAGAGAAAGCTTATTGAGTTCACGTGGCTCTGTGTCTATTGATGCACGAAC
CAATACTATTATTGTGAATGATACCCAGCTCTTTATTGATAAAATCCGGAATATGGTAGACTTGCTCGATGTACAGGTCA
AGCAGGTGATGGTCGAAGCACGTATTGTGCGAGCTACCACTGACTTCACCAAAGAAATGGGAGTGAAGTGGGGGATTCTA
TCTCAAGGGATTACCAACAATGATAGCCTTCTGGTCGGTGGTAGTGACACGACGTTATGGGATCTCAGAGATCCCCAAGA
AAGTGATTTAGGTGGATATACTTATGAGATTCAACGTCCACAAAACCTTAATGTAGACTTGGGTGTAACCAGTCCGGGTG
CAAGTCGTATTGCTTTTGGTCTAATCAGTCTATCGGATTTTATGCTGGATCTTGAGCTTTCTGCACTTCAGGCAGATGGC
TATGGTGAGGTGATTTCTACCCCTAAAGTACTGACTGCGGATAAGCAGAAAGCAACTGTTGCCTCTGGTTCACAAATTCC
GTATCAATCTGCTGAAGGTGGAGGTGCTAATGCTGTGTCCACTACTGAGTTTATTGATGCCACCTTAAGTCTGGATGTGA
CGCCAAGTATTACGCCAGATGGTAAAGTGCAGATGGAACTCAATATTACCAGTGATTCGCCGGGTAATCCGACACCGACT
GGACAGCTTACTATTAACAAAAACCAGATCAATACCAATGTCTTGGTTGATAATGGTGAAACAGTAGTTCTAGGTGGTAT
TTTTGAGCAGGAAACCCGTAATGCACAAACCAAGGTGCCATTCTTGGGGGATATTCCTTATGTAGGACGTTTATTCCGTA
AAGATTTAAAATCGGATAACAAGCGTGAGTTGCTGATTTTCGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAAT
CATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-134)

Secretin and TonB N terminus short domain (STN)

(305-347)

Bacterial type II and III secretion system protein (Secretin)

(555-713)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.151

100

0.741
  pilQ Acinetobacter baumannii strain A118

73.014

100

0.739
  comQ Acinetobacter baylyi ADP1

70.67

99.307

0.702
  pilQ Pseudomonas aeruginosa PAK

41.523

96.533

0.401
  pilQ Legionella pneumophila strain Lp02

37.147

98.197

0.365
  pilQ Legionella pneumophila strain ERS1305867

37.179

97.365

0.362