Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   J7649_RS08930 Genome accession   NZ_CP072549
Coordinates   1876991..1877629 (-) Length   212 a.a.
NCBI ID   WP_180180631.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain H7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1871991..1882629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7649_RS08910 (J7649_08910) aroK 1873001..1873537 (-) 537 WP_005094320.1 shikimate kinase AroK -
  J7649_RS08915 (J7649_08915) pilQ 1873574..1875739 (-) 2166 WP_219307481.1 type IV pilus secretin PilQ Machinery gene
  J7649_RS08920 (J7649_08920) pilP 1875757..1876284 (-) 528 WP_005248368.1 pilus assembly protein PilP Machinery gene
  J7649_RS08925 (J7649_08925) pilO 1876284..1876994 (-) 711 WP_005248371.1 type 4a pilus biogenesis protein PilO Machinery gene
  J7649_RS08930 (J7649_08930) comN 1876991..1877629 (-) 639 WP_180180631.1 PilN domain-containing protein Machinery gene
  J7649_RS08935 (J7649_08935) pilM 1877629..1878687 (-) 1059 WP_180037253.1 pilus assembly protein PilM Machinery gene
  J7649_RS08940 (J7649_08940) ponA 1878853..1881378 (+) 2526 WP_219307483.1 penicillin-binding protein PBP1a -
  J7649_RS08945 (J7649_08945) - 1881430..1882233 (-) 804 WP_219310088.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23899.09 Da        Isoelectric Point: 4.9286

>NTDB_id=554125 J7649_RS08930 WP_180180631.1 1876991..1877629(-) (comN) [Acinetobacter lwoffii strain H7]
MARINLLPWRDELRIKRNNEFVAICVGALFLGLAAAGSTWFYYDHKLQDQEQANQLIQSTNQNLDVQLKALEGLQEQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSNMYITKFQRTGDKFTIEGRAESPNTVAELLRNLEASSWYRNAFMNAFLV
AEEAKEKAPSSIIPRVEESYGSFTVTVDLDQIAQPVLNEEQQAVATTTGASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=554125 J7649_RS08930 WP_180180631.1 1876991..1877629(-) (comN) [Acinetobacter lwoffii strain H7]
ATGGCAAGAATTAACTTACTTCCTTGGCGTGATGAGCTAAGAATTAAAAGAAATAATGAATTCGTGGCAATCTGCGTGGG
GGCGCTTTTCTTGGGATTAGCGGCAGCGGGTTCAACCTGGTTTTATTATGATCACAAGCTTCAAGATCAGGAGCAGGCCA
ATCAGCTGATTCAAAGTACTAACCAGAATCTGGATGTGCAGTTAAAGGCGCTTGAAGGTTTACAAGAACAGCGTAATGCG
ATTGTTGAACGGATGAAACTGATTCAGGGTCTACAAACTCAGCGTCCGATTGCGGTGCATTTGATTGATGAAATTGTACG
GGTGACCCCAAGCAATATGTATATCACCAAATTCCAGCGTACCGGTGACAAGTTTACTATTGAAGGTCGAGCTGAGAGTC
CAAATACGGTCGCAGAACTGCTCCGTAATCTGGAAGCTTCATCTTGGTATCGAAATGCCTTTATGAACGCTTTCCTAGTG
GCTGAAGAAGCAAAAGAAAAGGCACCTAGCTCGATTATTCCACGTGTGGAAGAGTCCTATGGCAGTTTTACCGTGACGGT
AGATCTGGATCAAATCGCTCAGCCAGTACTTAACGAAGAACAACAAGCAGTCGCTACAACTACGGGGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

67.464

98.585

0.665
  pilN Acinetobacter baumannii D1279779

71.503

91.038

0.651