Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   J7D37_RS16190 Genome accession   NZ_CP072526
Coordinates   3391177..3391605 (-) Length   142 a.a.
NCBI ID   WP_004745390.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-E227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3386177..3396605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D37_RS16165 (J7D37_16165) - 3386537..3386920 (+) 384 WP_000090000.1 RidA family protein -
  J7D37_RS16170 (J7D37_16170) - 3387130..3387324 (+) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  J7D37_RS16175 (J7D37_16175) bfr 3387569..3388033 (+) 465 WP_000678123.1 bacterioferritin -
  J7D37_RS16180 (J7D37_16180) - 3388075..3389703 (-) 1629 WP_038347689.1 PglL family O-oligosaccharyltransferase -
  J7D37_RS16185 (J7D37_16185) - 3389811..3391121 (-) 1311 WP_038347686.1 O-antigen ligase family protein -
  J7D37_RS16190 (J7D37_16190) pilA 3391177..3391605 (-) 429 WP_004745390.1 pilin Machinery gene
  J7D37_RS16195 (J7D37_16195) - 3391946..3392506 (-) 561 WP_000258955.1 TPM domain-containing protein -
  J7D37_RS16200 (J7D37_16200) - 3392500..3393582 (-) 1083 WP_001246387.1 TPM domain-containing protein -
  J7D37_RS16205 (J7D37_16205) - 3393604..3394194 (-) 591 WP_000846931.1 LemA family protein -
  J7D37_RS16210 (J7D37_16210) - 3394325..3395212 (-) 888 WP_001017320.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14557.60 Da        Isoelectric Point: 7.7776

>NTDB_id=554045 J7D37_RS16190 WP_004745390.1 3391177..3391605(-) (pilA) [Acinetobacter baumannii strain DETAB-E227]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQASEAFTLADGLKTTINTNLQAGTCFAGGATTATAADKVGGKY
GDAEIGGNAPNCTITYTFKSSGVSNKLTSKKIAMNVSETGILTKNNSTDAPAELLPQSFTAS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=554045 J7D37_RS16190 WP_004745390.1 3391177..3391605(-) (pilA) [Acinetobacter baumannii strain DETAB-E227]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTTATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCAATTGCGAT
TCCTGCGTATCAAAATTACATTGCTAAGTCTCAAGCATCTGAAGCCTTTACGTTGGCAGATGGGTTGAAAACAACAATTA
ATACTAATTTACAAGCTGGAACTTGTTTTGCGGGTGGTGCTACGACAGCAACAGCAGCTGATAAAGTAGGTGGTAAATAC
GGTGATGCTGAGATTGGTGGAAATGCACCAAATTGTACGATTACCTATACATTCAAATCATCAGGTGTTTCAAATAAACT
TACATCTAAAAAGATTGCAATGAATGTAAGCGAAACAGGTATCTTAACAAAGAATAATTCTACTGATGCACCAGCTGAGC
TGCTTCCACAATCTTTTACAGCTTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

92.254

100

0.923
  pilA Acinetobacter baumannii strain A118

45.27

100

0.472
  pilA Vibrio cholerae strain A1552

41.096

100

0.423
  pilA Vibrio cholerae C6706

41.096

100

0.423
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

41.096

100

0.423
  pilA Pseudomonas aeruginosa PAK

44.068

83.099

0.366
  pilA2 Legionella pneumophila str. Paris

50

73.239

0.366