Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   J7445_RS08975 Genome accession   NZ_CP072524
Coordinates   1918754..1919044 (-) Length   96 a.a.
NCBI ID   WP_209283013.1    Uniprot ID   -
Organism   Neisseria sicca strain NS20201025     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1913754..1924044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS08950 (J7445_08950) - 1915406..1916719 (+) 1314 WP_019270964.1 NCS2 family permease -
  J7445_RS08955 (J7445_08955) - 1916812..1917162 (+) 351 WP_244969474.1 helix-turn-helix domain-containing protein -
  J7445_RS08960 (J7445_08960) - 1917066..1917494 (+) 429 WP_209283011.1 IS3 family transposase -
  J7445_RS08965 (J7445_08965) - 1917425..1917964 (+) 540 WP_209283012.1 IS3 family transposase -
  J7445_RS08970 (J7445_08970) comP 1918115..1918579 (-) 465 WP_019271154.1 type IV pilin protein Machinery gene
  J7445_RS08975 (J7445_08975) comE 1918754..1919044 (-) 291 WP_209283013.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 9918.56 Da        Isoelectric Point: 10.5400

>NTDB_id=553918 J7445_RS08975 WP_209283013.1 1918754..1919044(-) (comE) [Neisseria sicca strain NS20201025]
MKKLLFAALSVLTASLSLAAVNINTASSSELEALPGIGPAKAKAIVDYRQQHGAFKSVEELKNVKGIGEGIFSKLKAEAT
VAPAPANSKAKNAVQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=553918 J7445_RS08975 WP_209283013.1 1918754..1919044(-) (comE) [Neisseria sicca strain NS20201025]
ATGAAAAAACTCCTCTTTGCCGCACTCTCCGTTTTAACTGCCTCGCTGTCGCTGGCAGCCGTCAACATCAATACCGCCTC
TTCTTCCGAATTGGAAGCCCTGCCCGGCATCGGTCCGGCCAAAGCGAAAGCCATTGTGGACTACCGTCAGCAGCATGGTG
CCTTCAAATCGGTGGAAGAGCTCAAAAACGTCAAAGGCATCGGCGAGGGTATCTTCTCCAAACTGAAGGCCGAAGCAACC
GTCGCGCCCGCACCTGCAAACTCAAAAGCTAAAAACGCCGTCCAAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

61.628

89.583

0.552
  comE Neisseria gonorrhoeae MS11

61.628

89.583

0.552
  comE Neisseria gonorrhoeae MS11

61.628

89.583

0.552
  comE Neisseria gonorrhoeae MS11

61.628

89.583

0.552
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

84.375

0.458
  comEA Vibrio parahaemolyticus RIMD 2210633

48.864

91.667

0.448
  comEA Staphylococcus aureus N315

57.377

63.542

0.365
  comEA Staphylococcus aureus MW2

57.377

63.542

0.365