Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   J7445_RS08970 Genome accession   NZ_CP072524
Coordinates   1918115..1918579 (-) Length   154 a.a.
NCBI ID   WP_019271154.1    Uniprot ID   -
Organism   Neisseria sicca strain NS20201025     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1913115..1923579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS12365 (J7445_08945) - 1913154..1915172 (+) 2019 WP_209283009.1 YadA C-terminal domain-containing protein -
  J7445_RS08950 (J7445_08950) - 1915406..1916719 (+) 1314 WP_019270964.1 NCS2 family permease -
  J7445_RS08955 (J7445_08955) - 1916812..1917162 (+) 351 WP_244969474.1 helix-turn-helix domain-containing protein -
  J7445_RS08960 (J7445_08960) - 1917066..1917494 (+) 429 WP_209283011.1 IS3 family transposase -
  J7445_RS08965 (J7445_08965) - 1917425..1917964 (+) 540 WP_209283012.1 IS3 family transposase -
  J7445_RS08970 (J7445_08970) comP 1918115..1918579 (-) 465 WP_019271154.1 type IV pilin protein Machinery gene
  J7445_RS08975 (J7445_08975) comE 1918754..1919044 (-) 291 WP_209283013.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17350.82 Da        Isoelectric Point: 8.5930

>NTDB_id=553917 J7445_RS08970 WP_019271154.1 1918115..1918579(-) (comP) [Neisseria sicca strain NS20201025]
MNKENCKGYSLTQLIFVIAIIGFLTSIAYPSYQKYLRDSEIRQALAALVESAQFMERFYQQNGSFKKTSTAWPDLPNSRS
LENFCIYPHGLARGALDGKFTLKAVALDKNKEPRVIKINESLTTFICESTASSCDDVTKNYFSGADKNCSVYRL

Nucleotide


Download         Length: 465 bp        

>NTDB_id=553917 J7445_RS08970 WP_019271154.1 1918115..1918579(-) (comP) [Neisseria sicca strain NS20201025]
ATGAATAAAGAAAATTGTAAAGGGTATTCTCTTACTCAATTAATCTTTGTAATTGCAATAATTGGGTTCTTAACTTCAAT
AGCTTATCCAAGTTATCAAAAATATCTTAGAGACTCAGAAATACGTCAGGCTCTAGCAGCGCTTGTTGAGAGTGCTCAGT
TTATGGAGCGATTTTATCAGCAGAATGGTAGTTTCAAGAAAACTTCTACAGCGTGGCCTGATTTACCTAACTCGCGGAGT
TTAGAAAACTTTTGTATTTATCCTCATGGGCTTGCTAGAGGCGCGTTAGATGGGAAATTTACTTTAAAGGCAGTTGCATT
GGATAAAAATAAAGAACCTAGGGTAATAAAGATTAATGAATCTCTAACGACTTTTATTTGTGAGAGTACTGCTAGTTCTT
GTGATGATGTTACGAAAAACTATTTTTCTGGTGCAGATAAAAACTGTTCCGTATATCGGCTTTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(30-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria meningitidis 8013

53.061

95.455

0.506
  comP Neisseria gonorrhoeae MS11

53.061

95.455

0.506
  comP Neisseria subflava NJ9703

47.586

94.156

0.448