Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   LXN07_RS18240 Genome accession   NZ_CP090196
Coordinates   3787733..3788338 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain YL3     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3782733..3793338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN07_RS18220 (LXN07_18215) aes 3782874..3783833 (+) 960 WP_000801805.1 acetyl esterase -
  LXN07_RS18225 (LXN07_18220) hemH 3783830..3784792 (-) 963 WP_001250117.1 ferrochelatase -
  LXN07_RS18230 (LXN07_18225) adk 3784924..3785568 (-) 645 WP_001220233.1 adenylate kinase -
  LXN07_RS18235 (LXN07_18230) htpG 3785749..3787623 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  LXN07_RS18240 (LXN07_18235) recR 3787733..3788338 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  LXN07_RS18245 (LXN07_18240) ybaB 3788338..3788667 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  LXN07_RS18250 (LXN07_18245) dnaX 3788720..3790651 (-) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  LXN07_RS18255 (LXN07_18250) apt 3790780..3791331 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  LXN07_RS18260 (LXN07_18255) ybaN 3791484..3791861 (-) 378 WP_001188905.1 DUF454 family protein -
  LXN07_RS18265 (LXN07_18260) priC 3791931..3792458 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  LXN07_RS18270 (LXN07_18265) rsmS 3792472..3792636 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=553360 LXN07_RS18240 WP_001195025.1 3787733..3788338(-) (recR) [Escherichia coli strain YL3]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=553360 LXN07_RS18240 WP_001195025.1 3787733..3788338(-) (recR) [Escherichia coli strain YL3]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443