Detailed information NTG0553359

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: J7T63_RS09025
• Genome accession: NZ_CP072442
• Coordinates: 1723304..1723741 (-)
• Length: 145 a.a.
• NCBI ID: WP_082309153.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain S24726
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1718304..1728741

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7T63_RS08990 (J7T63_08915)	-	1718369..1719031 (-)	663	WP_011227583.1	CPBP family intramembrane glutamic endopeptidase	-
J7T63_RS08995 (J7T63_08920)	-	1719128..1719571 (-)	444	WP_041829335.1	hypothetical protein	-
J7T63_RS09000	-	1719645..1719983 (-)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
J7T63_RS09005 (J7T63_08930)	-	1720313..1720510 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
J7T63_RS09010 (J7T63_08935)	-	1720759..1721952 (-)	1194	WP_372429425.1	acetate kinase	-
J7T63_RS09015 (J7T63_08940)	comYH	1722008..1722964 (-)	957	WP_084831205.1	class I SAM-dependent methyltransferase	Machinery gene
J7T63_RS09020 (J7T63_08945)	comGG	1723009..1723326 (-)	318	WP_082309152.1	competence type IV pilus minor pilin ComGG	-
J7T63_RS09025 (J7T63_08950)	comYF	1723304..1723741 (-)	438	WP_082309153.1	competence type IV pilus minor pilin ComGF	Machinery gene
J7T63_RS09030 (J7T63_08955)	comGE	1723725..1724018 (-)	294	WP_082309154.1	competence type IV pilus minor pilin ComGE	-
J7T63_RS09035 (J7T63_08960)	comYD	1723990..1724418 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
J7T63_RS09040 (J7T63_08965)	comYC	1724378..1724704 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
J7T63_RS09045 (J7T63_08970)	comGB	1724701..1725800 (-)	1100	Protein_1725	competence type IV pilus assembly protein ComGB	-
J7T63_RS09050 (J7T63_08975)	comGA/cglA/cilD	1725682..1726623 (-)	942	WP_071417491.1	competence type IV pilus ATPase ComGA	Machinery gene
J7T63_RS09055 (J7T63_08980)	-	1726704..1727066 (-)	363	WP_014622006.1	DUF1033 family protein	-
J7T63_RS09060 (J7T63_08985)	-	1727336..1728585 (+)	1250	Protein_1728	ISL3 family transposase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16423.93 Da
• Isoelectric Point: 8.9531

>NTDB_id=553359 J7T63_RS09025 WP_082309153.1 1723304..1723741(-) (comYF) [Streptococcus thermophilus strain S24726]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQYLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=553359 J7T63_RS09025 WP_082309153.1 1723304..1723741(-) (comYF) [Streptococcus thermophilus strain S24726]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTTAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAATACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae D39	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae Rx1	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae R6	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae TIGR4	48.571	96.552	0.469
comGF/cglF	Streptococcus mitis NCTC 12261	47.518	97.241	0.462
comGF/cglF	Streptococcus mitis SK321	46.099	97.241	0.448
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434