Detailed information NTG0553070

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: J7U26_RS08520
• Genome accession: NZ_CP072437
• Coordinates: 1655816..1656244 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain S24734
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1650816..1661244

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U26_RS08480 (J7U26_08440)	-	1650945..1651397 (-)	453	WP_116920365.1	CAAX protease	-
J7U26_RS08485	-	1651471..1651896 (-)	426	WP_116920366.1	CPBP family intramembrane glutamic endopeptidase	-
J7U26_RS08490 (J7U26_08450)	-	1652139..1652336 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
J7U26_RS08495 (J7U26_08455)	-	1652585..1653778 (-)	1194	WP_014608740.1	acetate kinase	-
J7U26_RS08500 (J7U26_08460)	comYH	1653834..1654790 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
J7U26_RS08505 (J7U26_08465)	comGG	1654835..1655152 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
J7U26_RS08510 (J7U26_08470)	comYF	1655130..1655567 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
J7U26_RS08515 (J7U26_08475)	comGE	1655551..1655844 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
J7U26_RS08520 (J7U26_08480)	comYD	1655816..1656244 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
J7U26_RS08525 (J7U26_08485)	comYC	1656204..1656530 (-)	327	WP_014727724.1	competence type IV pilus major pilin ComGC	Machinery gene
J7U26_RS08530 (J7U26_08490)	comYB	1656527..1657627 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
J7U26_RS08535 (J7U26_08495)	comGA/cglA/cilD	1657509..1658450 (-)	942	WP_014727726.1	competence type IV pilus ATPase ComGA	Machinery gene
J7U26_RS08540 (J7U26_08500)	-	1658531..1658893 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=553070 J7U26_RS08520 WP_011226626.1 1655816..1656244(-) (comYD) [Streptococcus thermophilus strain S24734]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=553070 J7U26_RS08520 WP_011226626.1 1655816..1656244(-) (comYD) [Streptococcus thermophilus strain S24734]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTCAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38