Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LV497_RS09130 Genome accession   NZ_CP090007
Coordinates   1970150..1971820 (+) Length   556 a.a.
NCBI ID   WP_245084662.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1965150..1976820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS09100 (LV497_09100) - 1965535..1966296 (+) 762 WP_245084650.1 hypothetical protein -
  LV497_RS09105 (LV497_09105) xseA 1966483..1967811 (+) 1329 WP_245084653.1 exodeoxyribonuclease VII large subunit -
  LV497_RS09110 (LV497_09110) - 1967801..1968016 (+) 216 WP_002884058.1 exodeoxyribonuclease VII small subunit -
  LV497_RS09115 (LV497_09115) - 1968016..1968888 (+) 873 WP_245084656.1 polyprenyl synthetase family protein -
  LV497_RS09120 (LV497_09120) - 1968881..1969708 (+) 828 WP_084914644.1 TlyA family RNA methyltransferase -
  LV497_RS09125 (LV497_09125) - 1969695..1970141 (+) 447 WP_245084659.1 arginine repressor -
  LV497_RS09130 (LV497_09130) recN 1970150..1971820 (+) 1671 WP_245084662.1 DNA repair protein RecN Machinery gene
  LV497_RS09135 (LV497_09135) - 1971890..1972726 (+) 837 WP_002884124.1 DegV family protein -
  LV497_RS09140 (LV497_09140) - 1972719..1973594 (+) 876 WP_245084665.1 SGNH/GDSL hydrolase family protein -
  LV497_RS09145 (LV497_09145) - 1973587..1974159 (+) 573 WP_245084668.1 YpmS family protein -
  LV497_RS09150 (LV497_09150) - 1974296..1974571 (+) 276 WP_002884048.1 HU family DNA-binding protein -
  LV497_RS09155 (LV497_09155) - 1974631..1974831 (+) 201 WP_002883994.1 hypothetical protein -
  LV497_RS09160 (LV497_09160) - 1974893..1975828 (-) 936 WP_045772084.1 dihydroorotate oxidase -
  LV497_RS09165 (LV497_09165) - 1976084..1976776 (+) 693 WP_002884137.1 phosphoglycerate mutase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62298.44 Da        Isoelectric Point: 4.6133

>NTDB_id=553073 LV497_RS09130 WP_245084662.1 1970150..1971820(+) (recN) [Streptococcus salivarius strain SALI-10]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSASKAEIQGFFSIEQNPALVSIL
EANGIPVEDELIIRREIFQNGRSVSRINGQMVNLTTLKAVGHFLVDIHGQHDQEELMKTALHITMLDAFGDKEFFQTKKE
YQEYFDRYRELRKAVLEKQKNEQEHKARIEMLAFQIAEIEAVSLKSGEDLALMKERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSGNLSEAYYVLEDVTKQLGDLLDNLDFDAGRLQEIEHRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQTARHQIAKALEAEIKNELCDLYMDKADFKVTFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVQEIAKMLAGDNVTEAALSQARALLKVDDSL

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=553073 LV497_RS09130 WP_245084662.1 1970150..1971820(+) (recN) [Streptococcus salivarius strain SALI-10]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAGATTTCTCTAAACTTTGAGAATGGTATGACCGTCCT
TACTGGTGAAACAGGTGCTGGTAAGTCCATTATTATAGATGCCATGAATCTTATGTTGGGCGCACGTGCTTCTAGCGAAG
TCGTCCGTCATTCAGCATCTAAGGCTGAAATTCAGGGCTTCTTTTCAATCGAACAAAATCCTGCCTTGGTTAGTATCTTG
GAAGCTAATGGGATTCCTGTCGAGGATGAATTGATTATCCGTCGTGAAATCTTCCAAAATGGTAGAAGTGTTAGTCGCAT
CAATGGACAGATGGTCAATTTAACGACACTTAAAGCCGTTGGGCACTTCTTGGTAGATATCCATGGACAACATGACCAGG
AAGAGCTTATGAAGACTGCTCTGCATATTACCATGCTTGATGCCTTTGGTGACAAGGAATTTTTCCAGACTAAGAAAGAG
TACCAAGAGTATTTTGACCGCTATCGTGAGTTAAGAAAAGCCGTTCTTGAAAAGCAGAAAAATGAGCAGGAGCATAAGGC
TCGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGTCTCTCTAAAATCAGGAGAAGATTTGGCATTGATGA
AGGAGCGAGACAAGCTTCTTAACCATAAGCAGATTGCTGATACCTTAACCAATGCCTATGTCATGCTGGATAATGAAGAT
TTTTCAAGCCTTTCAAATGTTCGTTCTGCTATGAACGACCTCCAGTCTCTTGAAGAGTATGACTCTGATTACAAAGAACT
CTCTGGAAATCTATCAGAAGCCTATTATGTTCTTGAAGATGTCACTAAGCAACTTGGTGACCTTTTGGATAATTTGGACT
TTGATGCTGGGCGTTTGCAAGAGATTGAACACCGCTTAGATACGATTAATGCAATTACTCGTAAATATGGTGGAACTGTT
GATGACGTCTTGGATTATCTGGAAAATTCAAGTAAAGAGTACAATCTTCTGACTGGCAATTCCAGTTCGTCAGATGCCAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGATCTGCTAGCGTCTGCAGAGACACTACAAACGGCACGCCATCAAATAGCTA
AGGCTCTTGAAGCTGAAATTAAGAACGAGTTATGCGACCTTTACATGGATAAGGCTGATTTTAAAGTTACCTTTACTAAA
GGGAAATTTAACCGTGATGGCAATGAGCAGGTTGAGTTTTACATCTCAACCAATCCAGGTGAAGGCTTTAAACCGCTTGT
TAAGGTTGCTTCAGGAGGAGAATTATCTCGACTCATGTTAGCGATTAAGTCAGCCTTTGCCCGCAAAGAAGACAAAACAA
GTATTGTCTTTGATGAGGTTGATACTGGCGTTTCAGGTCGTGTTGCCCAAGCCATCGCTCAGAAAATTCATAAGATTGGG
AGTCATGGTCAGGTTTTGGCCATCAGTCACCTTCCACAAGTTATTGCCATTGCTGATTATCAGTTCTTTATTTCTAAGGA
AAGCGATAATGAGACGACTGTCTCTCGTGTTCGTCTCTTGACACCTGAGGAAAGGGTGCAAGAAATCGCTAAGATGTTAG
CAGGTGATAATGTGACGGAGGCTGCCCTGAGCCAAGCAAGAGCCTTGTTAAAGGTGGATGACTCTCTTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.154

100

0.455