Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LV497_RS09075 Genome accession   NZ_CP090007
Coordinates   1960037..1962238 (+) Length   733 a.a.
NCBI ID   WP_245085410.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1955037..1967238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS09050 (LV497_09050) - 1956229..1956870 (+) 642 WP_084914658.1 cystathionine beta-lyase -
  LV497_RS09055 (LV497_09055) rnz 1956902..1957831 (+) 930 WP_084914657.1 ribonuclease Z -
  LV497_RS09060 (LV497_09060) - 1957831..1958598 (+) 768 WP_084914655.1 SDR family oxidoreductase -
  LV497_RS09065 (LV497_09065) - 1958610..1959320 (+) 711 WP_084914653.1 class I SAM-dependent methyltransferase -
  LV497_RS09070 (LV497_09070) - 1959322..1959726 (+) 405 WP_245084644.1 GNAT family N-acetyltransferase -
  LV497_RS09075 (LV497_09075) recJ 1960037..1962238 (+) 2202 WP_245085410.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LV497_RS09080 (LV497_09080) - 1962357..1962875 (+) 519 WP_048790968.1 adenine phosphoribosyltransferase -
  LV497_RS09085 (LV497_09085) metA 1963048..1963992 (+) 945 WP_084914650.1 homoserine O-succinyltransferase -
  LV497_RS09090 (LV497_09090) - 1964065..1964763 (+) 699 WP_004182658.1 DnaD domain-containing protein -
  LV497_RS09095 (LV497_09095) nth 1964763..1965407 (+) 645 WP_245084647.1 endonuclease III -
  LV497_RS09100 (LV497_09100) - 1965535..1966296 (+) 762 WP_245084650.1 hypothetical protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82253.57 Da        Isoelectric Point: 4.3674

>NTDB_id=553072 LV497_RS09075 WP_245085410.1 1960037..1962238(+) (recJ) [Streptococcus salivarius strain SALI-10]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGITTEEALEAFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFIDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGRLSEILCHYIYDNNIDTSAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGVHLKFKVKQGKDSFDVVAFNKGNLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMSLPEGLPSVEEAADTEPAVVLNTLPESATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSQIFQNLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=553072 LV497_RS09075 WP_245085410.1 1960037..1962238(+) (recJ) [Streptococcus salivarius strain SALI-10]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
GCTGGCAGAAACTGCAGCCAAGATTGCCTATGAACGAGGCATTACGACAGAAGAGGCTCTTGAAGCCTTTCTAAAGGCTG
ATTTATCACACCTTCATGACCCTTATCTTCTTCATGATATGGATAAGGCGGTGGCTAGAATTCGTCAGGCCATTGAAAAT
TACGAGCAAATCTTAGTCTATGGAGACTATGATGCGGATGGGATGACGTCAGCATCGATTGTCAAGGAAGCTCTTGAAAT
GATGGGAGCTGAGGCTCGAGTCTATTTGCCTAACCGGTTTATAGATGGTTATGGGCCAAACGAAAGTGTCTACAAGTACT
TCATTGAACAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGGGTAGCGGGGAATGAGGCTATCGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCATCACAGTATGCCGGCACAGCTTCCAGATGCCTATGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGTTGTGGTGTAGCTTTCAAATTGGCAACTGCCCTCCTTG
AAACTATTCCTACTGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCCGATATGGTTAGCCTAACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTAAAGACTACTGAGCGTATTGGGCTTCAAGAATTGCTCCGCATTTCAGATGT
AGACCCAACAACGATTTCTGAAGAAACGGTCGGTTTCAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CGAATCCAGCCATTGAACTACTGACCGGATTTGACGATGAGGAAGCTCAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCCATGACTATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCAAAGGAAGGTTGGCATCCTGGCGTTCTAGGTATTGTGGCGGGGCGTATCATGGAACAAATCAGTCAGACGGTAGTGG
TTTTGAATATTGAAGATGGCTTGGCTAAGGGTTCCGCTCGTAGTTTGGAATCTATCAATATCTTCCATGCGCTTGATGAC
CACCGAGACATCTTTACTGCTTTTGGAGGACATGCTGGAGCGGCGGGGATGACCCTTCCAGAAGAAAATCTTGGACGACT
ATCAGAGATTTTGTGTCATTATATCTACGATAATAACATTGATACGAGTGCCAAAAATACGTTAAATTTAGACGAGGAGC
TTCAACTCAGCGAGCTTAGCTTGGATACCATTAAGAGCCTTGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGAGTCCATCTTAAGTTTAAGGTGAA
GCAAGGCAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTAATCTGCTTCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGACAGACAACGCTACAGCTCATGCTAGAAGATGCGCGTGTGGAT
GGTGTTCAATTATTTGATTTTCGATCAAAAAACATGTCACTGCCTGAAGGTCTACCATCGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTGTCCTCAACACCCTACCTGAATCAGCGACAGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTTCAGG
CTATCTATTTTAAAAATAGCATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTACCAATTCCCAGAATTCGATGTCCGCTATAAACTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTCCTGATTAAGATGATTCAAATCTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGTCAGATTTTCCAAAATCTGAAACGACTAGTTAAGTTCCAAGAACTCATGGCT
CTGGGAACACCACAGGAAATTTATGATTGGCTGTATAAGTAG

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-431)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.935

100

0.682
  recJ Bacillus subtilis subsp. subtilis str. 168

37.935

100

0.401