Detailed information NTG0553072

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: J7U26_RS08530
• Genome accession: NZ_CP072437
• Coordinates: 1656527..1657627 (-)
• Length: 366 a.a.
• NCBI ID: WP_116920398.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain S24734
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1651527..1662627

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U26_RS08490 (J7U26_08450)	-	1652139..1652336 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
J7U26_RS08495 (J7U26_08455)	-	1652585..1653778 (-)	1194	WP_014608740.1	acetate kinase	-
J7U26_RS08500 (J7U26_08460)	comYH	1653834..1654790 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
J7U26_RS08505 (J7U26_08465)	comGG	1654835..1655152 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
J7U26_RS08510 (J7U26_08470)	comYF	1655130..1655567 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
J7U26_RS08515 (J7U26_08475)	comGE	1655551..1655844 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
J7U26_RS08520 (J7U26_08480)	comYD	1655816..1656244 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
J7U26_RS08525 (J7U26_08485)	comYC	1656204..1656530 (-)	327	WP_014727724.1	competence type IV pilus major pilin ComGC	Machinery gene
J7U26_RS08530 (J7U26_08490)	comYB	1656527..1657627 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
J7U26_RS08535 (J7U26_08495)	comGA/cglA/cilD	1657509..1658450 (-)	942	WP_014727726.1	competence type IV pilus ATPase ComGA	Machinery gene
J7U26_RS08540 (J7U26_08500)	-	1658531..1658893 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41797.91 Da
• Isoelectric Point: 10.1084

>NTDB_id=553072 J7U26_RS08530 WP_116920398.1 1656527..1657627(-) (comYB) [Streptococcus thermophilus strain S24734]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKEASLSLM
KESLIRGDRLDQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=553072 J7U26_RS08530 WP_116920398.1 1656527..1657627(-) (comYB) [Streptococcus thermophilus strain S24734]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAGCATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGGATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.678	93.443	0.511
comYB	Streptococcus mutans UA159	54.678	93.443	0.511
comYB	Streptococcus gordonii str. Challis substr. CH1	51.17	93.443	0.478
comGB/cglB	Streptococcus mitis NCTC 12261	50.453	90.437	0.456
comGB/cglB	Streptococcus mitis SK321	49.697	90.164	0.448
comGB/cglB	Streptococcus pneumoniae Rx1	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae D39	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae R6	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae TIGR4	49.695	89.617	0.445
comGB	Lactococcus lactis subsp. cremoris KW2	45.758	90.164	0.413