Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   J7U07_RS08855 Genome accession   NZ_CP072433
Coordinates   1699927..1701027 (-) Length   366 a.a.
NCBI ID   WP_372588741.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24743     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1694927..1706027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U07_RS08815 (J7U07_08695) - 1695539..1695736 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  J7U07_RS08820 (J7U07_08700) - 1695985..1697178 (-) 1194 WP_014608740.1 acetate kinase -
  J7U07_RS08825 (J7U07_08705) comYH 1697234..1698190 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  J7U07_RS08830 (J7U07_08710) comGG 1698235..1698552 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  J7U07_RS08835 (J7U07_08715) comYF 1698530..1698967 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7U07_RS08840 (J7U07_08720) comGE 1698951..1699244 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  J7U07_RS08845 (J7U07_08725) comYD 1699216..1699644 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7U07_RS08850 (J7U07_08730) comYC 1699604..1699930 (-) 327 WP_014727724.1 competence type IV pilus major pilin ComGC Machinery gene
  J7U07_RS08855 (J7U07_08735) comYB 1699927..1701027 (-) 1101 WP_372588741.1 competence type IV pilus assembly protein ComGB Machinery gene
  J7U07_RS08860 (J7U07_08740) comGA/cglA/cilD 1700909..1701850 (-) 942 WP_014727726.1 competence type IV pilus ATPase ComGA Machinery gene
  J7U07_RS08865 (J7U07_08745) - 1701931..1702293 (-) 363 WP_014622006.1 DUF1033 family protein -
  J7U07_RS08870 (J7U07_08750) - 1702563..1703812 (+) 1250 Protein_1690 ISL3 family transposase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41769.90 Da        Isoelectric Point: 10.0983

>NTDB_id=552831 J7U07_RS08855 WP_372588741.1 1699927..1701027(-) (comYB) [Streptococcus thermophilus strain S24743]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKEASLSLM
KESLIRGDRLDQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANAKLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=552831 J7U07_RS08855 WP_372588741.1 1699927..1701027(-) (comYB) [Streptococcus thermophilus strain S24743]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAGCATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGGATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAAGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.971

93.443

0.514
  comYB Streptococcus mutans UA159

54.971

93.443

0.514
  comYB Streptococcus gordonii str. Challis substr. CH1

51.462

93.443

0.481
  comGB/cglB Streptococcus mitis NCTC 12261

50.755

90.437

0.459
  comGB/cglB Streptococcus mitis SK321

50

90.164

0.451
  comGB/cglB Streptococcus pneumoniae Rx1

49.697

90.164

0.448
  comGB/cglB Streptococcus pneumoniae D39

49.697

90.164

0.448
  comGB/cglB Streptococcus pneumoniae R6

49.697

90.164

0.448
  comGB/cglB Streptococcus pneumoniae TIGR4

49.697

90.164

0.448
  comGB Lactococcus lactis subsp. cremoris KW2

46.061

90.164

0.415