Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   J7U07_RS08825 Genome accession   NZ_CP072433
Coordinates   1697234..1698190 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain S24743     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1692234..1703190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U07_RS08795 (J7U07_08675) proC 1692795..1693565 (+) 771 WP_116920364.1 pyrroline-5-carboxylate reductase -
  J7U07_RS08800 (J7U07_08680) - 1693595..1694257 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  J7U07_RS08805 (J7U07_08685) - 1694354..1694797 (-) 444 WP_041829335.1 hypothetical protein -
  J7U07_RS08810 - 1694871..1695296 (-) 426 WP_014608739.1 CPBP family intramembrane glutamic endopeptidase -
  J7U07_RS08815 (J7U07_08695) - 1695539..1695736 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  J7U07_RS08820 (J7U07_08700) - 1695985..1697178 (-) 1194 WP_014608740.1 acetate kinase -
  J7U07_RS08825 (J7U07_08705) comYH 1697234..1698190 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  J7U07_RS08830 (J7U07_08710) comGG 1698235..1698552 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  J7U07_RS08835 (J7U07_08715) comYF 1698530..1698967 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7U07_RS08840 (J7U07_08720) comGE 1698951..1699244 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  J7U07_RS08845 (J7U07_08725) comYD 1699216..1699644 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7U07_RS08850 (J7U07_08730) comYC 1699604..1699930 (-) 327 WP_014727724.1 competence type IV pilus major pilin ComGC Machinery gene
  J7U07_RS08855 (J7U07_08735) comYB 1699927..1701027 (-) 1101 WP_372588741.1 competence type IV pilus assembly protein ComGB Machinery gene
  J7U07_RS08860 (J7U07_08740) comGA/cglA/cilD 1700909..1701850 (-) 942 WP_014727726.1 competence type IV pilus ATPase ComGA Machinery gene
  J7U07_RS08865 (J7U07_08745) - 1701931..1702293 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=552827 J7U07_RS08825 WP_011226622.1 1697234..1698190(-) (comYH) [Streptococcus thermophilus strain S24743]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=552827 J7U07_RS08825 WP_011226622.1 1697234..1698190(-) (comYH) [Streptococcus thermophilus strain S24743]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682