Detailed information NTG0552828

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: J7U07_RS08835
• Genome accession: NZ_CP072433
• Coordinates: 1698530..1698967 (-)
• Length: 145 a.a.
• NCBI ID: WP_014608742.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain S24743
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1693530..1703967

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U07_RS08800 (J7U07_08680)	-	1693595..1694257 (-)	663	WP_011227583.1	CPBP family intramembrane glutamic endopeptidase	-
J7U07_RS08805 (J7U07_08685)	-	1694354..1694797 (-)	444	WP_041829335.1	hypothetical protein	-
J7U07_RS08810	-	1694871..1695296 (-)	426	WP_014608739.1	CPBP family intramembrane glutamic endopeptidase	-
J7U07_RS08815 (J7U07_08695)	-	1695539..1695736 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
J7U07_RS08820 (J7U07_08700)	-	1695985..1697178 (-)	1194	WP_014608740.1	acetate kinase	-
J7U07_RS08825 (J7U07_08705)	comYH	1697234..1698190 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
J7U07_RS08830 (J7U07_08710)	comGG	1698235..1698552 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
J7U07_RS08835 (J7U07_08715)	comYF	1698530..1698967 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
J7U07_RS08840 (J7U07_08720)	comGE	1698951..1699244 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
J7U07_RS08845 (J7U07_08725)	comYD	1699216..1699644 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
J7U07_RS08850 (J7U07_08730)	comYC	1699604..1699930 (-)	327	WP_014727724.1	competence type IV pilus major pilin ComGC	Machinery gene
J7U07_RS08855 (J7U07_08735)	comYB	1699927..1701027 (-)	1101	WP_372588741.1	competence type IV pilus assembly protein ComGB	Machinery gene
J7U07_RS08860 (J7U07_08740)	comGA/cglA/cilD	1700909..1701850 (-)	942	WP_014727726.1	competence type IV pilus ATPase ComGA	Machinery gene
J7U07_RS08865 (J7U07_08745)	-	1701931..1702293 (-)	363	WP_014622006.1	DUF1033 family protein	-
J7U07_RS08870 (J7U07_08750)	-	1702563..1703812 (+)	1250	Protein_1690	ISL3 family transposase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16505.05 Da
• Isoelectric Point: 8.9784

>NTDB_id=552828 J7U07_RS08835 WP_014608742.1 1698530..1698967(-) (comYF) [Streptococcus thermophilus strain S24743]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEWNKLYVKKD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=552828 J7U07_RS08835 WP_014608742.1 1698530..1698967(-) (comYF) [Streptococcus thermophilus strain S24743]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGTGGAACAAACTCTATGTCAAGAAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.865	97.241	0.572
comYF	Streptococcus mutans UA159	58.156	97.241	0.566
comGF/cglF	Streptococcus pneumoniae D39	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae Rx1	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae R6	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae TIGR4	47.857	96.552	0.462
comGF/cglF	Streptococcus mitis NCTC 12261	46.099	97.241	0.448
comGF/cglF	Streptococcus mitis SK321	45.39	97.241	0.441
comGF	Lactococcus lactis subsp. cremoris KW2	46.043	95.862	0.441