Detailed information NTG0552605

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: J7U22_RS08905
• Genome accession: NZ_CP072428
• Coordinates: 1700250..1700678 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain S24749
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1695250..1705678

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U22_RS08865 (J7U22_08845)	-	1695386..1695829 (-)	444	WP_041829335.1	hypothetical protein	-
J7U22_RS08870	-	1695903..1696241 (-)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
J7U22_RS08875 (J7U22_08855)	-	1696573..1696770 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
J7U22_RS08880 (J7U22_08860)	-	1697019..1698212 (-)	1194	WP_014608740.1	acetate kinase	-
J7U22_RS08885 (J7U22_08865)	comYH	1698268..1699224 (-)	957	WP_372434691.1	class I SAM-dependent methyltransferase	Machinery gene
J7U22_RS08890 (J7U22_08870)	comGG	1699269..1699586 (-)	318	WP_011681685.1	competence type IV pilus minor pilin ComGG	-
J7U22_RS08895 (J7U22_08875)	comYF	1699564..1700001 (-)	438	WP_011681686.1	competence type IV pilus minor pilin ComGF	Machinery gene
J7U22_RS08900 (J7U22_08880)	comGE	1699985..1700278 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
J7U22_RS08905 (J7U22_08885)	comYD	1700250..1700678 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
J7U22_RS08910 (J7U22_08890)	comYC	1700638..1700964 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
J7U22_RS08915 (J7U22_08895)	comGB	1700961..1702060 (-)	1100	Protein_1699	competence type IV pilus assembly protein ComGB	-
J7U22_RS08920 (J7U22_08900)	comGA/cglA/cilD	1701942..1702883 (-)	942	WP_071417491.1	competence type IV pilus ATPase ComGA	Machinery gene
J7U22_RS08925 (J7U22_08905)	-	1702964..1703326 (-)	363	WP_014622006.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=552605 J7U22_RS08905 WP_011226626.1 1700250..1700678(-) (comYD) [Streptococcus thermophilus strain S24749]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=552605 J7U22_RS08905 WP_011226626.1 1700250..1700678(-) (comYD) [Streptococcus thermophilus strain S24749]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCGAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38