Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   J7U22_RS08885 Genome accession   NZ_CP072428
Coordinates   1698268..1699224 (-) Length   318 a.a.
NCBI ID   WP_372434691.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24749     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1693268..1704224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U22_RS08855 (J7U22_08835) proC 1693827..1694597 (+) 771 WP_014727718.1 pyrroline-5-carboxylate reductase -
  J7U22_RS08860 (J7U22_08840) - 1694627..1695289 (-) 663 WP_014727719.1 CPBP family intramembrane glutamic endopeptidase -
  J7U22_RS08865 (J7U22_08845) - 1695386..1695829 (-) 444 WP_041829335.1 hypothetical protein -
  J7U22_RS08870 - 1695903..1696241 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  J7U22_RS08875 (J7U22_08855) - 1696573..1696770 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  J7U22_RS08880 (J7U22_08860) - 1697019..1698212 (-) 1194 WP_014608740.1 acetate kinase -
  J7U22_RS08885 (J7U22_08865) comYH 1698268..1699224 (-) 957 WP_372434691.1 class I SAM-dependent methyltransferase Machinery gene
  J7U22_RS08890 (J7U22_08870) comGG 1699269..1699586 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  J7U22_RS08895 (J7U22_08875) comYF 1699564..1700001 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7U22_RS08900 (J7U22_08880) comGE 1699985..1700278 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  J7U22_RS08905 (J7U22_08885) comYD 1700250..1700678 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7U22_RS08910 (J7U22_08890) comYC 1700638..1700964 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  J7U22_RS08915 (J7U22_08895) comGB 1700961..1702060 (-) 1100 Protein_1699 competence type IV pilus assembly protein ComGB -
  J7U22_RS08920 (J7U22_08900) comGA/cglA/cilD 1701942..1702883 (-) 942 WP_071417491.1 competence type IV pilus ATPase ComGA Machinery gene
  J7U22_RS08925 (J7U22_08905) - 1702964..1703326 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35919.12 Da        Isoelectric Point: 4.7891

>NTDB_id=552603 J7U22_RS08885 WP_372434691.1 1698268..1699224(-) (comYH) [Streptococcus thermophilus strain S24749]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKYIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=552603 J7U22_RS08885 WP_372434691.1 1698268..1699224(-) (comYH) [Streptococcus thermophilus strain S24749]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTATATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.571

99.057

0.679
  comYH Streptococcus mutans UA140

68.571

99.057

0.679