Detailed information NTG0552589

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LVO07_RS09895
• Genome accession: NZ_CP089930
• Coordinates: 2078263..2079288 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644884.1
• Uniprot ID: A0ABU1DT91
• Organism: Escherichia coli strain E69
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2073263..2084288

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVO07_RS09865 (LVO07_09865)	zapB	2073348..2073593 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
LVO07_RS09870 (LVO07_09870)	rraA	2073677..2074162 (-)	486	WP_000872912.1	ribonuclease E activity regulator RraA	-
LVO07_RS09875 (LVO07_09875)	menA	2074255..2075181 (-)	927	WP_024212602.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LVO07_RS09880 (LVO07_09880)	hslU	2075248..2076579 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
LVO07_RS09885 (LVO07_09885)	hslV	2076589..2077119 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LVO07_RS09890 (LVO07_09890)	ftsN	2077212..2078171 (-)	960	WP_000068842.1	cell division protein FtsN	-
LVO07_RS09895 (LVO07_09895)	cytR	2078263..2079288 (-)	1026	WP_000644884.1	DNA-binding transcriptional regulator CytR	Regulator
LVO07_RS09900 (LVO07_09900)	priA	2079444..2081642 (-)	2199	WP_024212601.1	primosomal protein N'	Machinery gene
LVO07_RS09905 (LVO07_09905)	rpmE	2081846..2082058 (+)	213	WP_000710770.1	50S ribosomal protein L31	-
LVO07_RS09910 (LVO07_09910)	-	2082129..2083409 (-)	1281	WP_233074288.1	sigma-54 dependent transcriptional regulator	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37704.68 Da
• Isoelectric Point: 5.9712

>NTDB_id=552589 LVO07_RS09895 WP_000644884.1 2078263..2079288(-) (cytR) [Escherichia coli strain E69]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSLATRNRVEKAARDVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEITAASHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKLIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFDAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPDDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQTV
GSGSRLMDCELIIRGSTRTLT

Nucleotide

• Length: 1026 bp

>NTDB_id=552589 LVO07_RS09895 WP_000644884.1 2078263..2079288(-) (cytR) [Escherichia coli strain E69]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCAACCATGAAAGACGTCGCCCTGAAAGCAAAAGTCTCTACGGCAACCGTCTC
CCGAGCGTTAATGAATCCAGATAAGGTCTCCCTGGCGACTCGTAACCGGGTTGAAAAAGCCGCCCGGGATGTGGGTTATT
TACCGCAGCCGATGGGGCGTAACGTCAAGCGTAATGAGTCCCGCACCATTCTGGTGATTGTCCCGGATATCTGTGATCCC
TTCTTTAGCGAAATTATTCGCGGAATCGAAATTACGGCAGCAAGTCATGGGTATCTGGTACTGATTGGCGACTGTGCACA
TCAAAACCAGCAGGAAAAAACCTTTATCGATTTGATAATCACTAAGCAAATTGATGGCATGTTGCTGCTCGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAA
CTGCCTACAGTTCATATCGACAACCTGACCGCTGCATTTGATGCGGTAAATTACCTGTATGAACAGGGGCATAAATTGAT
CGGCTGTATTGCTGGGCCGGAAGAAATGCCGCTGTGTCACTATCGCCTGCAAGGCTACGTTCAGGCTCTGCGTCGCTGCG
GAATTATGGTTGATCCACAATACATCGCCCGTGGCGACTTCACCTTCGACGCCGGAAGCAAAGCCATGCAGCAGTTGCTC
GACCTTCCGCAACCGCCAACTGCTGTTTTCTGTCATAGCGATGTGATGGCACTTGGCGCACTTTCGCAGGCAAAACGTCA
GGGGCTGAAAGTTCCTGATGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCACTGA
CAACCATCGCACAGCCGCGCTATGAAATTGGTCGCGAGGCAATGTTGTTATTGCTTGACCAAATGCAGGGGCAAACGGTC
GGCAGTGGCTCACGTTTAATGGACTGCGAGCTTATTATCCGGGGATCGACACGCACATTGACTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	64.526	95.894	0.619