Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LVO07_RS09900 Genome accession   NZ_CP089930
Coordinates   2079444..2081642 (-) Length   732 a.a.
NCBI ID   WP_024212601.1    Uniprot ID   -
Organism   Escherichia coli strain E69     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2074444..2086642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVO07_RS09880 (LVO07_09880) hslU 2075248..2076579 (-) 1332 WP_001293344.1 HslU--HslV peptidase ATPase subunit -
  LVO07_RS09885 (LVO07_09885) hslV 2076589..2077119 (-) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  LVO07_RS09890 (LVO07_09890) ftsN 2077212..2078171 (-) 960 WP_000068842.1 cell division protein FtsN -
  LVO07_RS09895 (LVO07_09895) cytR 2078263..2079288 (-) 1026 WP_000644884.1 DNA-binding transcriptional regulator CytR Regulator
  LVO07_RS09900 (LVO07_09900) priA 2079444..2081642 (-) 2199 WP_024212601.1 primosomal protein N' Machinery gene
  LVO07_RS09905 (LVO07_09905) rpmE 2081846..2082058 (+) 213 WP_000710770.1 50S ribosomal protein L31 -
  LVO07_RS09910 (LVO07_09910) - 2082129..2083409 (-) 1281 WP_233074288.1 sigma-54 dependent transcriptional regulator -
  LVO07_RS09915 (LVO07_09915) - 2083412..2085379 (-) 1968 WP_105281120.1 ATP-binding protein -
  LVO07_RS09920 (LVO07_09920) - 2085376..2086608 (-) 1233 WP_000619303.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 732 a.a.        Molecular weight: 81699.03 Da        Isoelectric Point: 9.0297

>NTDB_id=552590 LVO07_RS09900 WP_024212601.1 2079444..2081642(-) (priA) [Escherichia coli strain E69]
MPVAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIGIVVSVSDVSELPLNELKAVVEVLDVEPVFTHSVWRL
LLWAADYYHHPIGDVLFHALPILLRQGRPAANAPMWYWFATEHGQAVDINSLKRSPKQQQALAALRQGKIWRDQVATLEF
NDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFSAWLLAGVTGSGKTEVYLSVLEN
VLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSAWLKAKNGEAAIVIGTRSALFTPFKNLGVIVID
EEHDSSYKQQEGWRYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARPAIQHVLDLKGQKVQ
AGLAPALISRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQAQQHLRCHHCDSQRPVPRQCPSCG
STHLVPVGLGTEQLEQTLAPMFPGVPISRIDRDTTSRKGALEQQLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVD
GALFSADFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHHPEHPLLQTLLYKGYDAFAEQALAERRMMQLPPWTSHVIVR
AEDHNNQHAPLFLQQLRNLILSSPLADEKLWVLGPVPALAPKRGGRWRWQILLQHPSRVRLQHIINGTLALINTIPDSRK
VKWVLDVDPIEG

Nucleotide


Download         Length: 2199 bp        

>NTDB_id=552590 LVO07_RS09900 WP_024212601.1 2079444..2081642(-) (priA) [Escherichia coli strain E69]
ATGCCCGTTGCTCACGTTGCCTTGCCCGTTCCGCTTCCCCGAACCTTTGACTATCTGCTGCCTGAAGGCATGACGGTTAA
AGCCGGGTGTCGCGTGCGCGTGCCGTTTGGTAAACAGCAGGAGCGCATCGGGATTGTGGTGTCCGTTAGCGATGTCAGCG
AGCTGCCGCTCAACGAGCTAAAAGCGGTAGTTGAAGTGCTGGACGTTGAGCCGGTATTTACTCACTCCGTCTGGCGATTA
CTGCTATGGGCGGCGGATTATTATCATCATCCCATTGGCGATGTGTTGTTTCATGCCTTGCCGATTTTACTGCGCCAGGG
GCGACCTGCAGCGAACGCGCCCATGTGGTACTGGTTTGCCACCGAGCACGGTCAGGCGGTAGATATCAACAGCCTGAAAC
GTTCGCCAAAGCAACAACAGGCACTGGCGGCATTGCGACAAGGGAAAATCTGGCGCGACCAGGTTGCCACTCTCGAATTT
AATGATGCCGCGCTACAGGCACTGCGCAAAAAAGGTCTGTGTGATTTAGCAAGTGAAACACCAGAGTTTAGTGACTGGCG
AACGAACTACGCCGTTTCTGGCGAGCGGTTGCGACTGAATACTGAACAAGCCACCGCCGTTGGCGCCATCCATAGCGCGG
CAGATACCTTTTCCGCCTGGCTGCTGGCGGGCGTCACCGGCTCCGGTAAAACGGAAGTTTATCTAAGCGTGCTGGAAAAC
GTGCTCGCCCAGGGCAAACAGGCGCTGGTAATGGTGCCGGAAATCGGCCTGACACCGCAAACTATCGCCCGTTTTCGTGA
ACGGTTTAATGCGCCCGTGGAAGTTCTGCATTCTGGCCTGAACGACAGCGAGCGCCTTTCTGCGTGGTTGAAAGCGAAAA
ATGGCGAGGCGGCGATTGTGATTGGCACCCGCTCCGCGCTGTTTACACCGTTTAAAAATCTCGGCGTGATTGTCATTGAT
GAAGAGCACGACAGTTCCTACAAACAGCAGGAAGGCTGGCGCTATCATGCCCGCGACCTGGCGGTGTATCGCGCGCATAG
CGAGCAAATCCCGATTATTCTTGGCTCCGCAACGCCCGCGCTGGAAACGTTATGCAACGTCCAGCAGAAAAAATACCGCC
TGCTGCGCCTGACCCGTCGGGCGGGTAATGCGCGTCCGGCAATTCAACACGTGCTGGATTTAAAAGGTCAGAAGGTGCAA
GCGGGGCTGGCTCCGGCGTTGATCAGCCGTATGCGCCAGCATTTACAGGCCGACAACCAGGTTATCCTCTTTCTTAACCG
CCGGGGTTTTGCGCCTGCGCTGCTGTGCCACGACTGTGGCTGGATAGCCGAATGCCCGCGTTGCGATCACTACTACACAT
TGCATCAGGCGCAGCAGCATCTGCGCTGTCATCACTGCGACAGCCAGCGCCCAGTGCCGCGCCAGTGCCCTTCCTGCGGC
TCCACGCATCTTGTGCCGGTGGGCCTGGGCACCGAGCAGCTTGAGCAGACGCTTGCCCCGATGTTCCCTGGTGTACCCAT
TTCACGTATTGATCGTGACACTACCAGCCGCAAAGGTGCGCTGGAACAACAACTGGCGGAAGTACATCGCGGCGGCGCGC
GGATTTTGATTGGCACGCAAATGCTGGCGAAAGGTCACCACTTTCCGGATGTCACACTTGTGGCATTACTGGACGTGGAC
GGTGCGCTGTTTTCTGCCGATTTTCGATCCGCAGAACGTTTCGCCCAGCTTTACACCCAGGTTGCTGGTCGTGCGGGGCG
TGCCGGTAAACAGGGCGAAGTGGTGCTGCAAACGCATCATCCGGAACATCCTCTCTTGCAAACATTGCTCTATAAAGGCT
ATGACGCCTTTGCAGAACAGGCGCTGGCCGAGCGGCGTATGATGCAGCTACCACCGTGGACCAGCCACGTGATTGTGCGC
GCCGAAGATCATAACAATCAGCACGCGCCGCTGTTCCTGCAACAGTTGCGAAATCTCATCCTCTCCAGTCCGCTGGCGGA
TGAGAAACTGTGGGTTCTCGGCCCGGTTCCAGCACTGGCACCCAAACGTGGCGGTCGCTGGCGCTGGCAGATCCTGCTGC
AACATCCTTCCCGCGTGCGCTTACAGCACATCATTAACGGTACGCTGGCGCTTATTAATACAATACCGGATTCACGGAAA
GTGAAATGGGTGCTGGATGTCGATCCTATTGAGGGTTAA

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(632-729)

DEAD/DEAH box helicase (DEAD)

(203-362)

Helicase conserved C-terminal domain (Helicase_C)

(522-589)

3DNA-binding domain (3BD) (PriA_3primeBD)

(6-101)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

44.444

100

0.448