Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   J4854_RS07990 Genome accession   NZ_CP072329
Coordinates   1589289..1589879 (-) Length   196 a.a.
NCBI ID   WP_187540319.1    Uniprot ID   -
Organism   Streptococcus lactarius strain CCUG 66490     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1584289..1594879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS07965 (J4854_07965) - 1584965..1585729 (-) 765 WP_200772574.1 ABC transporter ATP-binding protein -
  J4854_RS07970 (J4854_07970) - 1585729..1586676 (-) 948 WP_200772573.1 branched-chain amino acid ABC transporter permease -
  J4854_RS07975 (J4854_07975) - 1586680..1587549 (-) 870 WP_200772571.1 branched-chain amino acid ABC transporter permease -
  J4854_RS07980 (J4854_07980) - 1587631..1588788 (-) 1158 WP_200772570.1 ABC transporter substrate-binding protein -
  J4854_RS07985 (J4854_07985) - 1588897..1589175 (-) 279 WP_200772568.1 DUF2129 domain-containing protein -
  J4854_RS07990 (J4854_07990) clpP 1589289..1589879 (-) 591 WP_187540319.1 ATP-dependent Clp protease proteolytic subunit Regulator
  J4854_RS07995 (J4854_07995) upp 1590012..1590641 (-) 630 WP_187540317.1 uracil phosphoribosyltransferase -
  J4854_RS08000 (J4854_08000) mgtA 1590861..1593521 (-) 2661 WP_200772567.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21424.42 Da        Isoelectric Point: 4.4829

>NTDB_id=552061 J4854_RS07990 WP_187540319.1 1589289..1589879(-) (clpP) [Streptococcus lactarius strain CCUG 66490]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYMYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEKILADNSGQ
PIEKVHADAERDNWMSAQETLEYGFIDEVMTNNNLG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=552061 J4854_RS07990 WP_187540319.1 1589289..1589879(-) (clpP) [Streptococcus lactarius strain CCUG 66490]
ATGATTCCAGTAGTTATTGAGCAAACTAGCCGTGGAGAACGTTCCTATGATATTTATTCCCGTCTGTTGAAAGACCGGAT
TATCATGGTAACAGGGCCGGTTGAGGACCAAATGGCCAACTCAATCATTGCGCAGTTGCTCTTCTTGGATGCCCAAGATA
ATACCAAAGATATCTATATGTATGTCAATACCCCAGGTGGATCAGTTTCTGCAGGTCTCGCCATTGTCGATACAATGAAC
TTTATTAAGTCAGATGTTCAAACCATCGTCATGGGAATGGCTGCTTCAATGGGAACCATCATCGCTTCAAGCGGTGCCAA
AGGCAAACGCTTCATGTTGCCAAATGCTGAGTACATGATTCACCAACCAATGGGTGGTACTGGTGGTGGTACCCAACAAA
CAGACATGGCCATTGCAGCAGAACACTTGCTTAAAACACGGAATAACTTGGAAAAAATCCTCGCGGATAATTCAGGACAA
CCAATTGAAAAAGTGCATGCGGATGCGGAACGTGACAATTGGATGAGTGCCCAAGAAACACTTGAATATGGCTTTATTGA
CGAAGTGATGACCAACAACAATTTGGGCTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

95.385

99.49

0.949
  clpP Streptococcus thermophilus LMD-9

95.385

99.49

0.949
  clpP Streptococcus pneumoniae Rx1

92.821

99.49

0.923
  clpP Streptococcus pneumoniae D39

92.821

99.49

0.923
  clpP Streptococcus pneumoniae R6

92.821

99.49

0.923
  clpP Streptococcus pneumoniae TIGR4

92.821

99.49

0.923
  clpP Streptococcus pyogenes JRS4

88.205

99.49

0.878
  clpP Streptococcus pyogenes MGAS315

88.205

99.49

0.878
  clpP Streptococcus mutans UA159

87.179

99.49

0.867
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.128

99.49

0.847
  clpP Lactococcus lactis subsp. cremoris KW2

84.615

99.49

0.842
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571
  clpP Bacillus subtilis subsp. subtilis str. 168

57.812

97.959

0.566