Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   J4854_RS05995 Genome accession   NZ_CP072329
Coordinates   1172815..1173663 (-) Length   282 a.a.
NCBI ID   WP_200773315.1    Uniprot ID   A0A9X0WQU7
Organism   Streptococcus lactarius strain CCUG 66490     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1167815..1178663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS05980 (J4854_05980) - 1168170..1168997 (-) 828 WP_187540945.1 alpha/beta hydrolase -
  J4854_RS05985 (J4854_05985) trmFO 1169086..1170423 (-) 1338 WP_200773313.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  J4854_RS05990 (J4854_05990) topA 1170641..1172728 (-) 2088 WP_200773314.1 type I DNA topoisomerase -
  J4854_RS05995 (J4854_05995) dprA/cilB/dalA 1172815..1173663 (-) 849 WP_200773315.1 DNA-processing protein DprA Machinery gene
  J4854_RS06000 (J4854_06000) - 1173773..1174540 (-) 768 WP_200773316.1 ribonuclease HII -
  J4854_RS06005 (J4854_06005) ylqF 1174527..1175378 (-) 852 WP_200773317.1 ribosome biogenesis GTPase YlqF -
  J4854_RS06010 (J4854_06010) - 1175491..1175829 (-) 339 WP_187540951.1 ATP cone domain-containing protein -
  J4854_RS06015 (J4854_06015) dapA 1175892..1176827 (-) 936 WP_187540953.1 4-hydroxy-tetrahydrodipicolinate synthase -
  J4854_RS06020 (J4854_06020) - 1177142..1178218 (-) 1077 WP_200773318.1 aspartate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31453.18 Da        Isoelectric Point: 5.6614

>NTDB_id=552053 J4854_RS05995 WP_200773315.1 1172815..1173663(-) (dprA/cilB/dalA) [Streptococcus lactarius strain CCUG 66490]
MEAFEIYKLKAAGLTNEQVLRILAICQEGESLPPLEEMAKIARCRSIIRFVEQYRQLDEEQLRTEFERFPSLSIFDSDYP
ESLMQIYNPPVLLFYQGNLNLLAEPKIAVVGARETSREGVKSVEKIIQELQNQLVVVSGLAKGIDATAHYACIRNGGKTI
GVIGTGLDIFYPKSNQRLQTHMSEHHLVLSEYGPGQAPLKFHFPERNRIIAGLCQAVIVAEARLRSGSLITCERAMEEGR
DVFAIPGNILDGKSAGCHHLIQEGAKLVTSGQDILDELKYEL

Nucleotide


Download         Length: 849 bp        

>NTDB_id=552053 J4854_RS05995 WP_200773315.1 1172815..1173663(-) (dprA/cilB/dalA) [Streptococcus lactarius strain CCUG 66490]
ATGGAAGCATTTGAAATTTATAAATTAAAAGCAGCAGGATTGACGAATGAACAGGTCTTGAGAATTTTAGCAATTTGTCA
GGAAGGAGAATCTCTCCCTCCTCTAGAAGAAATGGCAAAAATTGCACGTTGCCGTAGTATCATTCGGTTTGTGGAGCAAT
ACCGACAACTGGATGAGGAGCAGTTGCGAACAGAATTTGAGCGTTTTCCCTCTCTATCCATTTTTGATTCAGACTATCCC
GAATCTTTGATGCAGATCTACAATCCCCCTGTTTTGCTCTTTTATCAAGGAAATCTAAATTTGTTAGCAGAACCGAAAAT
AGCAGTAGTAGGAGCCAGGGAGACGAGCAGGGAAGGAGTAAAATCGGTTGAAAAGATCATCCAGGAACTACAAAATCAGC
TGGTGGTGGTCAGTGGCCTTGCAAAAGGGATCGACGCAACGGCCCATTACGCCTGCATAAGAAATGGTGGCAAGACGATC
GGGGTTATTGGGACAGGACTGGATATTTTCTATCCTAAGAGCAATCAAAGATTACAGACACACATGAGCGAACACCATCT
TGTCTTGAGCGAGTATGGACCAGGACAGGCCCCTTTGAAGTTCCATTTTCCAGAGCGAAATCGCATCATTGCAGGACTCT
GTCAGGCTGTGATTGTGGCAGAGGCACGACTTCGTTCAGGAAGTTTAATTACTTGTGAGCGTGCCATGGAGGAAGGACGG
GATGTCTTTGCTATTCCAGGAAATATTTTAGATGGAAAATCTGCAGGTTGCCATCACTTGATTCAAGAAGGCGCAAAGCT
TGTCACATCGGGTCAGGACATTCTTGATGAATTGAAATACGAATTGTGA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)

DNA recombination-mediator protein A (DNA_processg_A)

(72-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis SK321

65.704

98.227

0.645
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

65.704

98.227

0.645
  dprA/cilB/dalA Streptococcus pneumoniae R6

65.343

98.227

0.642
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

65.343

98.227

0.642
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

65.343

98.227

0.642
  dprA/cilB/dalA Streptococcus pneumoniae D39

65.343

98.227

0.642
  dprA Streptococcus mutans UA159

60.357

99.291

0.599
  dprA Lactococcus lactis subsp. cremoris KW2

55.036

98.582

0.543
  dprA Latilactobacillus sakei subsp. sakei 23K

43.254

89.362

0.387
  dprA Legionella pneumophila strain ERS1305867

43.096

84.752

0.365